JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PNMA8B_chr19_46486191_46500867	0/0	t0025	2770	1	1	0	0	0	0	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	t0026	2770	1	0	0	1	0	0	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	t0027	2770	1	0	0	0	0	1	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	t0028	2770	1	0	0	1	0	0	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	t0029	2770	1	0	0	1	0	0	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8C_chr19_46419697_46433936	0/1	t0001	3625	98	13	22	48	5	9	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	t0002	3618	80	13	11	41	1	14	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	t0003	3626	47	3	8	30	2	4	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	t0004	3626	25	5	6	9	1	4	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	t0005	3626	22	0	1	10	5	6	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	t0006	3626	15	5	2	8	0	0	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	1/0	t0007	3626	15	0	8	1	3	2	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	t0008	3626	14	13	1	0	0	0	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	t0009	3618	10	0	5	5	0	0	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	t0010	3627	10	0	2	7	1	0	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	t0011	3627	8	7	1	0	0	0	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	t0012	3626	8	0	0	8	0	0	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	t0013	3618	7	0	0	7	0	0	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	t0014	3626	6	1	5	0	0	0	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	t0015	3626	5	1	0	3	0	1	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	t0016	3626	5	5	0	0	0	0	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	t0017	3627	5	5	0	0	0	0	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	t0018	3602	4	1	3	0	0	0	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	t0019	3626	4	4	0	0	0	0	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	t0020	3625	3	3	0	0	0	0	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	t0021	3625	3	3	0	0	0	0	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	t0022	3626	3	3	0	0	0	0	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	t0023	3625	3	0	0	0	0	3	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	t0024	3626	3	0	3	0	0	0	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	t0025	3627	3	0	0	2	0	1	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	t0026	3602	2	2	0	0	0	0	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	t0027	3625	2	0	0	2	0	0	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	t0028	3625	2	0	0	2	0	0	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	t0029	3625	1	0	1	0	0	0	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	t0030	3626	1	1	0	0	0	0	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	t0031	3627	1	1	0	0	0	0	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	t0032	3627	1	1	0	0	0	0	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	t0033	3627	1	1	0	0	0	0	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	t0034	3626	1	0	1	0	0	0	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	t0035	3618	1	0	0	1	0	0	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	t0036	3626	1	0	0	0	0	1	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	t0037	3626	1	0	0	1	0	0	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	t0038	3618	1	1	0	0	0	0	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	t0039	3618	1	0	0	1	0	0	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	t0040	3618	1	0	0	1	0	0	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	t0041	3626	1	0	0	0	0	1	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	t0042	3618	1	1	0	0	0	0	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	t0043	3651	1	0	0	1	0	0	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	t0044	3626	1	0	0	1	0	0	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	t0045	3626	1	0	0	1	0	0	copy fasta	PNMA8C	chr19	46419697	46433936