Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATP13A3_chr3_194397677_194492002	0/0	t0020	3767	2	0	2	0	0	0	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	t0021	3768	2	2	0	0	0	0	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	t0022	3768	2	0	0	2	0	0	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	t0023	3767	2	2	0	0	0	0	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	t0024	3768	2	0	0	2	0	0	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	t0025	3767	2	0	0	2	0	0	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	t0026	3769	2	2	0	0	0	0	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	t0027	3768	1	0	0	1	0	0	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	t0028	3768	1	1	0	0	0	0	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	t0029	3768	1	1	0	0	0	0	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	t0030	3770	1	0	0	0	0	1	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	t0031	3769	1	0	0	1	0	0	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	t0032	3767	1	0	0	0	0	1	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	t0033	3768	1	0	1	0	0	0	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	t0034	3769	1	0	0	1	0	0	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	t0035	3769	1	1	0	0	0	0	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	t0036	3769	1	0	0	1	0	0	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	t0037	3769	1	1	0	0	0	0	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	t0038	3768	1	1	0	0	0	0	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	t0039	3769	1	1	0	0	0	0	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	t0040	3768	1	0	0	0	0	1	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	t0041	3768	1	1	0	0	0	0	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	t0042	3768	1	0	1	0	0	0	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	1/0	t0043	3768	1	0	0	0	0	0	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	t0044	3768	1	0	1	0	0	0	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	t0045	3770	1	1	0	0	0	0	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	t0046	3767	1	0	0	1	0	0	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	t0047	3771	1	0	0	1	0	0	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	t0048	3769	1	0	0	0	0	1	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	t0049	3768	1	0	0	1	0	0	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	t0050	3768	1	1	0	0	0	0	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	t0051	3769	1	0	0	0	0	1	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	t0052	3789	1	1	0	0	0	0	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A3_chr3_194397677_194492002	0/0	t0053	3790	1	0	1	0	0	0	copy fasta	ATP13A3	chr3	194397677	194492002
ATP13A4_chr3_193393967_193559895	0/1	t0001	3784	161	22	31	76	7	24	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A4_chr3_193393967_193559895	0/0	t0002	3780	38	11	8	17	1	1	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A4_chr3_193393967_193559895	1/0	t0003	3782	34	8	6	15	1	3	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A4_chr3_193393967_193559895	0/0	t0004	3780	16	0	3	9	2	2	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A4_chr3_193393967_193559895	0/0	t0005	3785	9	2	3	1	1	2	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A4_chr3_193393967_193559895	0/0	t0006	3783	6	2	1	3	0	0	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A4_chr3_193393967_193559895	0/0	t0007	3785	4	4	0	0	0	0	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A4_chr3_193393967_193559895	0/0	t0008	3784	3	0	0	3	0	0	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A4_chr3_193393967_193559895	0/0	t0009	3781	2	0	1	1	0	0	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A4_chr3_193393967_193559895	0/0	t0010	3780	2	2	0	0	0	0	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A4_chr3_193393967_193559895	0/0	t0011	3780	2	2	0	0	0	0	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A4_chr3_193393967_193559895	0/0	t0012	3780	2	2	0	0	0	0	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A4_chr3_193393967_193559895	0/0	t0013	3781	2	2	0	0	0	0	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A4_chr3_193393967_193559895	0/0	t0014	3783	2	2	0	0	0	0	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A4_chr3_193393967_193559895	0/0	t0015	3781	2	0	1	1	0	0	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A4_chr3_193393967_193559895	0/0	t0016	3781	2	2	0	0	0	0	copy fasta	ATP13A4	chr3	193393967	193559895