JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PNMA8C_chr19_46419697_46433936	0/0	t0046	3618	1	0	0	1	0	0	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	t0047	3625	1	1	0	0	0	0	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	t0048	3627	1	1	0	0	0	0	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	t0049	3618	1	0	0	0	0	1	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	t0050	3603	1	1	0	0	0	0	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	t0051	3618	1	0	1	0	0	0	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	t0052	3626	1	0	0	0	0	1	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	t0053	3626	1	1	0	0	0	0	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	t0054	3625	1	1	0	0	0	0	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	t0055	3627	1	1	0	0	0	0	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	t0056	3618	1	0	1	0	0	0	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	t0057	3626	1	0	0	1	0	0	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	t0058	3627	1	1	0	0	0	0	copy fasta	PNMA8C	chr19	46419697	46433936
PNMT_chr17_39663453_39675475	1/1	t0001	110	369	81	80	154	18	34	copy fasta	PNMT	chr17	39663453	39675475
PNMT_chr17_39663453_39675475	0/0	t0002	110	7	7	0	0	0	0	copy fasta	PNMT	chr17	39663453	39675475
PNN_chr14_39170254_39188220	1/1	t0001	1384	270	56	37	148	9	18	copy fasta	PNN	chr14	39170254	39188220
PNN_chr14_39170254_39188220	0/0	t0002	1384	52	0	14	24	3	11	copy fasta	PNN	chr14	39170254	39188220
PNN_chr14_39170254_39188220	0/0	t0003	1384	41	14	5	15	0	7	copy fasta	PNN	chr14	39170254	39188220
PNN_chr14_39170254_39188220	0/0	t0004	1384	33	15	3	6	3	6	copy fasta	PNN	chr14	39170254	39188220
PNN_chr14_39170254_39188220	0/0	t0005	1384	18	0	10	8	0	0	copy fasta	PNN	chr14	39170254	39188220
PNN_chr14_39170254_39188220	0/0	t0006	1382	18	0	13	0	3	2	copy fasta	PNN	chr14	39170254	39188220
PNN_chr14_39170254_39188220	0/0	t0007	1384	5	5	0	0	0	0	copy fasta	PNN	chr14	39170254	39188220
PNN_chr14_39170254_39188220	0/0	t0008	1384	2	0	0	2	0	0	copy fasta	PNN	chr14	39170254	39188220
PNN_chr14_39170254_39188220	0/0	t0009	1384	1	1	0	0	0	0	copy fasta	PNN	chr14	39170254	39188220
PNN_chr14_39170254_39188220	0/0	t0010	1384	1	1	0	0	0	0	copy fasta	PNN	chr14	39170254	39188220
PNN_chr14_39170254_39188220	0/0	t0011	1384	1	1	0	0	0	0	copy fasta	PNN	chr14	39170254	39188220
PNN_chr14_39170254_39188220	0/0	t0012	1384	1	1	0	0	0	0	copy fasta	PNN	chr14	39170254	39188220
PNN_chr14_39170254_39188220	0/0	t0013	1384	1	0	0	1	0	0	copy fasta	PNN	chr14	39170254	39188220
PNO1_chr2_68152888_68181238	0/0	t0001	1473	204	69	43	64	6	22	copy fasta	PNO1	chr2	68152888	68181238
PNO1_chr2_68152888_68181238	1/1	t0002	1484	130	2	27	81	4	14	copy fasta	PNO1	chr2	68152888	68181238
PNO1_chr2_68152888_68181238	0/0	t0003	1473	79	18	14	35	4	8	copy fasta	PNO1	chr2	68152888	68181238
PNO1_chr2_68152888_68181238	0/0	t0004	1473	17	0	1	14	0	2	copy fasta	PNO1	chr2	68152888	68181238
PNO1_chr2_68152888_68181238	0/0	t0005	1477	5	0	0	5	0	0	copy fasta	PNO1	chr2	68152888	68181238
PNO1_chr2_68152888_68181238	0/0	t0006	1473	2	2	0	0	0	0	copy fasta	PNO1	chr2	68152888	68181238
PNO1_chr2_68152888_68181238	0/0	t0007	1473	1	0	1	0	0	0	copy fasta	PNO1	chr2	68152888	68181238
PNO1_chr2_68152888_68181238	0/0	t0008	1484	1	0	0	1	0	0	copy fasta	PNO1	chr2	68152888	68181238
PNO1_chr2_68152888_68181238	0/0	t0009	1473	1	1	0	0	0	0	copy fasta	PNO1	chr2	68152888	68181238
PNO1_chr2_68152888_68181238	0/0	t0010	1473	1	1	0	0	0	0	copy fasta	PNO1	chr2	68152888	68181238
PNO1_chr2_68152888_68181238	0/0	t0011	1473	1	1	0	0	0	0	copy fasta	PNO1	chr2	68152888	68181238
PNO1_chr2_68152888_68181238	0/0	t0012	1473	1	1	0	0	0	0	copy fasta	PNO1	chr2	68152888	68181238
PNO1_chr2_68152888_68181238	0/0	t0013	1473	1	1	0	0	0	0	copy fasta	PNO1	chr2	68152888	68181238
PNOC_chr8_28312268_28348351	1/1	t0001	530	289	80	43	135	6	23	copy fasta	PNOC	chr8	28312268	28348351
PNOC_chr8_28312268_28348351	0/0	t0002	530	124	8	34	60	4	18	copy fasta	PNOC	chr8	28312268	28348351
PNOC_chr8_28312268_28348351	0/0	t0003	530	4	3	1	0	0	0	copy fasta	PNOC	chr8	28312268	28348351
PNOC_chr8_28312268_28348351	0/0	t0004	530	3	0	2	0	0	1	copy fasta	PNOC	chr8	28312268	28348351
PNOC_chr8_28312268_28348351	0/0	t0005	530	1	0	0	1	0	0	copy fasta	PNOC	chr8	28312268	28348351
PNOC_chr8_28312268_28348351	0/0	t0006	530	1	0	0	1	0	0	copy fasta	PNOC	chr8	28312268	28348351
PNOC_chr8_28312268_28348351	0/0	t0007	530	1	0	0	1	0	0	copy fasta	PNOC	chr8	28312268	28348351
PNOC_chr8_28312268_28348351	0/0	t0008	530	1	1	0	0	0	0	copy fasta	PNOC	chr8	28312268	28348351
PNPLA1_chr6_36265060_36318955	1/1	t0001	2470	193	29	41	77	10	34	copy fasta	PNPLA1	chr6	36265060	36318955