JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PNPLA1_chr6_36265060_36318955	0/0	t0002	2470	87	10	17	59	0	1	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	t0003	2470	28	10	6	5	4	3	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	t0004	2470	26	16	2	5	0	3	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	t0005	2470	12	12	0	0	0	0	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	t0006	2470	7	6	0	1	0	0	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	t0007	2470	5	1	0	0	0	4	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	t0008	2470	4	0	0	4	0	0	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	t0009	2470	3	0	1	1	0	1	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	t0010	2470	2	0	0	2	0	0	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	t0011	2470	2	2	0	0	0	0	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	t0012	2470	1	0	0	1	0	0	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	t0013	2470	1	1	0	0	0	0	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	t0014	2470	1	0	0	1	0	0	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	t0015	2470	1	1	0	0	0	0	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	t0016	2470	1	0	1	0	0	0	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	t0017	2470	1	0	0	0	0	1	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	t0018	2470	1	1	0	0	0	0	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	t0019	2470	1	1	0	0	0	0	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	t0020	2470	1	0	0	0	0	1	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	t0021	2470	1	0	0	1	0	0	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	t0022	2470	1	0	1	0	0	0	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	t0023	2470	1	1	0	0	0	0	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	t0024	2470	1	0	1	0	0	0	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	t0025	2470	1	1	0	0	0	0	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	t0026	2470	1	0	0	1	0	0	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	t0027	2470	1	0	0	1	0	0	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	t0028	2470	1	0	0	1	0	0	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA2_chr11_813914_830573	0/1	t0001	898	151	23	42	71	9	5	copy fasta	PNPLA2	chr11	813914	830573
PNPLA2_chr11_813914_830573	1/0	t0002	902	147	25	25	62	7	27	copy fasta	PNPLA2	chr11	813914	830573
PNPLA2_chr11_813914_830573	0/0	t0003	898	129	38	10	63	2	16	copy fasta	PNPLA2	chr11	813914	830573
PNPLA2_chr11_813914_830573	0/0	t0004	898	6	5	1	0	0	0	copy fasta	PNPLA2	chr11	813914	830573
PNPLA2_chr11_813914_830573	0/0	t0005	902	2	0	0	2	0	0	copy fasta	PNPLA2	chr11	813914	830573
PNPLA2_chr11_813914_830573	0/0	t0006	902	2	1	0	1	0	0	copy fasta	PNPLA2	chr11	813914	830573
PNPLA2_chr11_813914_830573	0/0	t0007	898	1	0	0	1	0	0	copy fasta	PNPLA2	chr11	813914	830573
PNPLA2_chr11_813914_830573	0/0	t0008	898	1	0	0	1	0	0	copy fasta	PNPLA2	chr11	813914	830573
PNPLA2_chr11_813914_830573	0/0	t0009	902	1	0	1	0	0	0	copy fasta	PNPLA2	chr11	813914	830573
PNPLA2_chr11_813914_830573	0/0	t0010	902	1	0	1	0	0	0	copy fasta	PNPLA2	chr11	813914	830573
PNPLA2_chr11_813914_830573	0/0	t0011	898	1	0	0	1	0	0	copy fasta	PNPLA2	chr11	813914	830573
PNPLA3_chr22_43918805_43952582	0/1	t0001	1312	111	8	27	61	5	9	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/0	t0002	1312	99	7	11	70	3	8	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	1/0	t0003	1308	72	12	17	22	5	15	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/0	t0004	1310	57	25	6	16	1	9	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/0	t0005	1310	21	20	1	0	0	0	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/0	t0006	1309	10	10	0	0	0	0	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/0	t0007	1311	8	1	2	5	0	0	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/0	t0008	1310	6	0	5	0	1	0	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/0	t0009	1309	6	4	2	0	0	0	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/0	t0010	1311	4	4	0	0	0	0	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/0	t0011	1308	3	0	0	3	0	0	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/0	t0012	1308	2	2	0	0	0	0	copy fasta	PNPLA3	chr22	43918805	43952582