JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PNPLA3_chr22_43918805_43952582	0/0	t0013	1311	2	2	0	0	0	0	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/0	t0014	1311	2	2	0	0	0	0	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/0	t0015	1313	2	0	0	2	0	0	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/0	t0016	1311	2	0	1	1	0	0	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/0	t0017	1308	2	0	2	0	0	0	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/0	t0018	1312	1	0	0	1	0	0	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/0	t0019	1310	1	0	0	0	0	1	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/0	t0020	1313	1	0	1	0	0	0	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/0	t0021	1313	1	0	0	1	0	0	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/0	t0022	1312	1	0	1	0	0	0	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/0	t0023	1310	1	0	0	1	0	0	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/0	t0024	1311	1	1	0	0	0	0	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/0	t0025	1310	1	0	0	1	0	0	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/0	t0026	1309	1	1	0	0	0	0	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/0	t0027	1312	1	1	0	0	0	0	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/0	t0028	1311	1	0	0	0	1	0	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA4_chrX_7893247_7932413	0/0	t0001	2593	33	1	5	19	1	7	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0002	2589	28	4	3	17	1	3	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0003	2595	21	1	6	11	0	3	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0004	2587	19	2	2	15	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0005	2597	17	0	4	12	0	1	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0006	2591	17	1	3	12	0	1	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0007	2589	15	0	2	11	1	1	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0008	2585	14	2	2	10	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0009	2591	14	1	2	7	2	2	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0010	2578	13	10	3	0	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0011	2585	12	0	0	10	0	2	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/1	t0012	2583	10	2	2	4	0	1	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0013	2599	5	1	1	3	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0014	2583	5	0	0	3	1	1	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0015	2589	5	0	2	3	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0016	2584	4	3	1	0	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0017	2581	4	3	1	0	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0018	2587	4	0	1	3	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0019	2589	4	4	0	0	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0020	2591	4	0	3	1	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0021	2587	4	0	3	1	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0022	2589	3	0	1	0	1	1	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0023	2601	3	0	0	2	0	1	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0024	2592	3	3	0	0	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0025	2590	3	3	0	0	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0026	2586	3	2	1	0	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0027	2583	3	3	0	0	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0028	2582	3	3	0	0	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	1/0	t0029	2581	3	0	1	1	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0030	2579	3	3	0	0	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0031	2581	3	3	0	0	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0032	2603	2	0	0	2	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0033	2571	2	0	1	0	1	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0034	2567	2	0	0	2	0	0	copy fasta	PNPLA4	chrX	7893247	7932413