JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PNPLA4_chrX_7893247_7932413	0/0	t0035	2579	2	0	1	1	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0036	2587	2	2	0	0	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0037	2591	2	0	2	0	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0038	2597	2	0	0	2	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0039	2601	2	1	1	0	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0040	2597	1	0	0	1	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0041	2594	1	1	0	0	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0042	2587	1	0	0	0	0	1	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0043	2585	1	1	0	0	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0044	2579	1	0	1	0	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0045	2580	1	0	1	0	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0046	2578	1	1	0	0	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0047	2577	1	1	0	0	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0048	2569	1	1	0	0	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0049	2594	1	0	0	1	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0050	2575	1	0	0	0	0	1	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0051	2583	1	1	0	0	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0052	2587	1	0	0	1	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0053	2589	1	0	0	1	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0054	2589	1	0	0	1	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0055	2589	1	0	1	0	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0056	2590	1	0	0	1	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0057	2593	1	0	0	1	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0058	2595	1	0	0	0	0	1	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0059	2597	1	1	0	0	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0060	2603	1	1	0	0	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0061	2581	1	1	0	0	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0062	2581	1	0	0	0	0	1	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0063	2587	1	0	1	0	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0064	2589	1	0	0	0	1	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0065	2602	1	0	0	1	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0066	2585	1	0	0	0	0	1	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0067	2596	1	0	0	1	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0068	2589	1	0	1	0	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0069	2585	1	0	0	1	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0070	2581	1	1	0	0	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0071	2579	1	1	0	0	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0072	2587	1	0	0	1	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0073	2579	1	1	0	0	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0074	2577	1	1	0	0	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0075	2577	1	1	0	0	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0076	2585	1	0	0	0	0	1	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0077	2593	1	0	1	0	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0078	2590	1	0	0	1	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	t0079	2587	1	0	0	1	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA5_chr22_43874678_43897013	0/0	t0001	1251	152	51	28	50	7	16	copy fasta	PNPLA5	chr22	43874678	43897013
PNPLA5_chr22_43874678_43897013	0/0	t0002	1251	111	16	8	67	3	17	copy fasta	PNPLA5	chr22	43874678	43897013
PNPLA5_chr22_43874678_43897013	0/0	t0003	1249	99	10	16	67	2	4	copy fasta	PNPLA5	chr22	43874678	43897013
PNPLA5_chr22_43874678_43897013	0/1	t0004	1251	25	6	11	1	3	3	copy fasta	PNPLA5	chr22	43874678	43897013
PNPLA5_chr22_43874678_43897013	1/0	t0005	1251	24	1	12	4	3	3	copy fasta	PNPLA5	chr22	43874678	43897013