JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PNPLA5_chr22_43874678_43897013	0/0	t0006	1249	9	5	3	0	0	1	copy fasta	PNPLA5	chr22	43874678	43897013
PNPLA5_chr22_43874678_43897013	0/0	t0007	1251	5	1	3	0	0	1	copy fasta	PNPLA5	chr22	43874678	43897013
PNPLA5_chr22_43874678_43897013	0/0	t0008	1251	3	3	0	0	0	0	copy fasta	PNPLA5	chr22	43874678	43897013
PNPLA5_chr22_43874678_43897013	0/0	t0009	1249	2	0	0	2	0	0	copy fasta	PNPLA5	chr22	43874678	43897013
PNPLA5_chr22_43874678_43897013	0/0	t0010	1249	2	0	0	2	0	0	copy fasta	PNPLA5	chr22	43874678	43897013
PNPLA5_chr22_43874678_43897013	0/0	t0011	1251	1	0	0	0	0	1	copy fasta	PNPLA5	chr22	43874678	43897013
PNPLA5_chr22_43874678_43897013	0/0	t0012	1251	1	0	0	1	0	0	copy fasta	PNPLA5	chr22	43874678	43897013
PNPLA5_chr22_43874678_43897013	0/0	t0013	1251	1	0	1	0	0	0	copy fasta	PNPLA5	chr22	43874678	43897013
PNPLA5_chr22_43874678_43897013	0/0	t0014	1249	1	1	0	0	0	0	copy fasta	PNPLA5	chr22	43874678	43897013
PNPLA5_chr22_43874678_43897013	0/0	t0015	1249	1	0	0	1	0	0	copy fasta	PNPLA5	chr22	43874678	43897013
PNPLA5_chr22_43874678_43897013	0/0	t0016	1249	1	0	0	1	0	0	copy fasta	PNPLA5	chr22	43874678	43897013
PNPLA6_chr19_7530717_7566764	1/1	t0001	275	409	87	82	179	16	43	copy fasta	PNPLA6	chr19	7530717	7566764
PNPLA6_chr19_7530717_7566764	0/0	t0002	275	3	3	0	0	0	0	copy fasta	PNPLA6	chr19	7530717	7566764
PNPLA6_chr19_7530717_7566764	0/0	t0003	275	1	0	0	1	0	0	copy fasta	PNPLA6	chr19	7530717	7566764
PNPLA6_chr19_7530717_7566764	0/0	t0004	275	1	0	0	1	0	0	copy fasta	PNPLA6	chr19	7530717	7566764
PNPLA6_chr19_7530717_7566764	0/0	t0005	275	1	0	0	0	0	1	copy fasta	PNPLA6	chr19	7530717	7566764
PNPLA6_chr19_7530717_7566764	0/0	t0006	275	1	0	0	1	0	0	copy fasta	PNPLA6	chr19	7530717	7566764
PNPLA7_chr9_137454952_137555402	1/1	t0001	647	168	56	26	54	8	22	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	t0002	647	8	8	0	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	t0003	647	4	4	0	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	t0004	530	3	2	1	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	t0005	647	3	0	1	0	0	2	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	t0006	647	1	1	0	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	t0007	647	1	1	0	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA8_chr7_108465417_108531135	1/1	t0001	2221	220	32	40	113	10	23	copy fasta	PNPLA8	chr7	108465417	108531135
PNPLA8_chr7_108465417_108531135	0/0	t0002	2221	63	23	11	21	0	8	copy fasta	PNPLA8	chr7	108465417	108531135
PNPLA8_chr7_108465417_108531135	0/0	t0003	2220	43	10	6	25	0	2	copy fasta	PNPLA8	chr7	108465417	108531135
PNPLA8_chr7_108465417_108531135	0/0	t0004	2221	8	1	2	4	0	1	copy fasta	PNPLA8	chr7	108465417	108531135
PNPLA8_chr7_108465417_108531135	0/0	t0005	2221	5	4	1	0	0	0	copy fasta	PNPLA8	chr7	108465417	108531135
PNPLA8_chr7_108465417_108531135	0/0	t0006	2220	5	0	0	0	1	4	copy fasta	PNPLA8	chr7	108465417	108531135
PNPLA8_chr7_108465417_108531135	0/0	t0007	2221	4	0	0	4	0	0	copy fasta	PNPLA8	chr7	108465417	108531135
PNPLA8_chr7_108465417_108531135	0/0	t0008	2222	4	3	1	0	0	0	copy fasta	PNPLA8	chr7	108465417	108531135
PNPLA8_chr7_108465417_108531135	0/0	t0009	2221	4	4	0	0	0	0	copy fasta	PNPLA8	chr7	108465417	108531135
PNPLA8_chr7_108465417_108531135	0/0	t0010	2220	4	1	3	0	0	0	copy fasta	PNPLA8	chr7	108465417	108531135
PNPLA8_chr7_108465417_108531135	0/0	t0011	2220	4	3	1	0	0	0	copy fasta	PNPLA8	chr7	108465417	108531135
PNPLA8_chr7_108465417_108531135	0/0	t0012	2221	4	1	0	3	0	0	copy fasta	PNPLA8	chr7	108465417	108531135
PNPLA8_chr7_108465417_108531135	0/0	t0013	2222	3	3	0	0	0	0	copy fasta	PNPLA8	chr7	108465417	108531135
PNPLA8_chr7_108465417_108531135	0/0	t0014	2222	2	0	0	2	0	0	copy fasta	PNPLA8	chr7	108465417	108531135
PNPLA8_chr7_108465417_108531135	0/0	t0015	2221	2	2	0	0	0	0	copy fasta	PNPLA8	chr7	108465417	108531135
PNPLA8_chr7_108465417_108531135	0/0	t0016	2221	2	0	0	2	0	0	copy fasta	PNPLA8	chr7	108465417	108531135
PNPLA8_chr7_108465417_108531135	0/0	t0017	2222	1	1	0	0	0	0	copy fasta	PNPLA8	chr7	108465417	108531135
PNPLA8_chr7_108465417_108531135	0/0	t0018	2221	1	1	0	0	0	0	copy fasta	PNPLA8	chr7	108465417	108531135
PNPLA8_chr7_108465417_108531135	0/0	t0019	2221	1	1	0	0	0	0	copy fasta	PNPLA8	chr7	108465417	108531135
PNPLA8_chr7_108465417_108531135	0/0	t0020	2220	1	1	0	0	0	0	copy fasta	PNPLA8	chr7	108465417	108531135
PNPLA8_chr7_108465417_108531135	0/0	t0021	2221	1	0	0	0	0	1	copy fasta	PNPLA8	chr7	108465417	108531135
PNPLA8_chr7_108465417_108531135	0/0	t0022	2221	1	0	0	0	0	1	copy fasta	PNPLA8	chr7	108465417	108531135
PNPLA8_chr7_108465417_108531135	0/0	t0023	2222	1	0	1	0	0	0	copy fasta	PNPLA8	chr7	108465417	108531135
PNPLA8_chr7_108465417_108531135	0/0	t0024	2221	1	0	0	1	0	0	copy fasta	PNPLA8	chr7	108465417	108531135
PNPLA8_chr7_108465417_108531135	0/0	t0025	2221	1	0	0	0	1	0	copy fasta	PNPLA8	chr7	108465417	108531135
PNPLA8_chr7_108465417_108531135	0/0	t0026	2221	1	1	0	0	0	0	copy fasta	PNPLA8	chr7	108465417	108531135