JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PNPLA8_chr7_108465417_108531135	0/0	t0027	2221	1	1	0	0	0	0	copy fasta	PNPLA8	chr7	108465417	108531135
PNPLA8_chr7_108465417_108531135	0/0	t0028	2221	1	0	0	1	0	0	copy fasta	PNPLA8	chr7	108465417	108531135
PNPLA8_chr7_108465417_108531135	0/0	t0029	2221	1	1	0	0	0	0	copy fasta	PNPLA8	chr7	108465417	108531135
PNPO_chr17_47936571_47954308	0/0	t0001	2632	101	8	37	33	5	18	copy fasta	PNPO	chr17	47936571	47954308
PNPO_chr17_47936571_47954308	0/1	t0002	2635	80	5	7	57	4	6	copy fasta	PNPO	chr17	47936571	47954308
PNPO_chr17_47936571_47954308	0/0	t0003	2632	56	8	3	38	0	7	copy fasta	PNPO	chr17	47936571	47954308
PNPO_chr17_47936571_47954308	1/0	t0004	2632	42	19	13	0	4	5	copy fasta	PNPO	chr17	47936571	47954308
PNPO_chr17_47936571_47954308	0/0	t0005	2634	29	20	5	2	1	1	copy fasta	PNPO	chr17	47936571	47954308
PNPO_chr17_47936571_47954308	0/0	t0006	2634	10	0	5	0	4	1	copy fasta	PNPO	chr17	47936571	47954308
PNPO_chr17_47936571_47954308	0/0	t0007	2633	9	9	0	0	0	0	copy fasta	PNPO	chr17	47936571	47954308
PNPO_chr17_47936571_47954308	0/0	t0008	2634	6	6	0	0	0	0	copy fasta	PNPO	chr17	47936571	47954308
PNPO_chr17_47936571_47954308	0/0	t0009	2632	6	0	0	6	0	0	copy fasta	PNPO	chr17	47936571	47954308
PNPO_chr17_47936571_47954308	0/0	t0010	2632	5	2	0	1	0	2	copy fasta	PNPO	chr17	47936571	47954308
PNPO_chr17_47936571_47954308	0/0	t0011	2632	5	0	0	5	0	0	copy fasta	PNPO	chr17	47936571	47954308
PNPO_chr17_47936571_47954308	0/0	t0012	2634	5	0	0	5	0	0	copy fasta	PNPO	chr17	47936571	47954308
PNPO_chr17_47936571_47954308	0/0	t0013	2633	4	3	1	0	0	0	copy fasta	PNPO	chr17	47936571	47954308
PNPO_chr17_47936571_47954308	0/0	t0014	2633	3	3	0	0	0	0	copy fasta	PNPO	chr17	47936571	47954308
PNPO_chr17_47936571_47954308	0/0	t0015	2634	3	1	2	0	0	0	copy fasta	PNPO	chr17	47936571	47954308
PNPO_chr17_47936571_47954308	0/0	t0016	2635	3	0	1	0	0	2	copy fasta	PNPO	chr17	47936571	47954308
PNPO_chr17_47936571_47954308	0/0	t0017	2632	2	0	2	0	0	0	copy fasta	PNPO	chr17	47936571	47954308
PNPO_chr17_47936571_47954308	0/0	t0018	2632	2	2	0	0	0	0	copy fasta	PNPO	chr17	47936571	47954308
PNPO_chr17_47936571_47954308	0/0	t0019	2633	2	0	0	2	0	0	copy fasta	PNPO	chr17	47936571	47954308
PNPO_chr17_47936571_47954308	0/0	t0020	2632	1	1	0	0	0	0	copy fasta	PNPO	chr17	47936571	47954308
PNPO_chr17_47936571_47954308	0/0	t0021	2632	1	0	1	0	0	0	copy fasta	PNPO	chr17	47936571	47954308
PNPO_chr17_47936571_47954308	0/0	t0022	2632	1	1	0	0	0	0	copy fasta	PNPO	chr17	47936571	47954308
PNPO_chr17_47936571_47954308	0/0	t0023	2633	1	0	0	1	0	0	copy fasta	PNPO	chr17	47936571	47954308
PNPO_chr17_47936571_47954308	0/0	t0024	2632	1	1	0	0	0	0	copy fasta	PNPO	chr17	47936571	47954308
PNPO_chr17_47936571_47954308	0/0	t0025	2633	1	1	0	0	0	0	copy fasta	PNPO	chr17	47936571	47954308
PNPO_chr17_47936571_47954308	0/0	t0026	2635	1	0	1	0	0	0	copy fasta	PNPO	chr17	47936571	47954308
PNPT1_chr2_55629061_55698844	0/0	t0001	2198	101	13	22	52	4	10	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/0	t0002	2198	85	29	27	18	3	8	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	1/0	t0003	2198	70	0	6	56	0	7	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/1	t0004	2197	39	24	4	7	0	3	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/0	t0005	2200	11	0	0	10	0	1	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/0	t0006	2198	10	1	3	0	1	5	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/0	t0007	2198	10	0	5	0	0	5	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/0	t0008	2198	7	7	0	0	0	0	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/0	t0009	2199	5	0	1	3	0	1	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/0	t0010	2198	5	5	0	0	0	0	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/0	t0011	2198	3	0	0	3	0	0	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/0	t0012	2198	3	0	0	3	0	0	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/0	t0013	2199	2	0	1	1	0	0	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/0	t0014	2199	2	1	0	1	0	0	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/0	t0015	2198	2	0	0	2	0	0	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/0	t0016	2197	2	2	0	0	0	0	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/0	t0017	2198	2	0	0	2	0	0	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/0	t0018	2198	2	2	0	0	0	0	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/0	t0019	2197	2	2	0	0	0	0	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/0	t0020	2197	2	2	0	0	0	0	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/0	t0021	2198	2	1	1	0	0	0	copy fasta	PNPT1	chr2	55629061	55698844