JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PNPT1_chr2_55629061_55698844	0/0	t0022	2199	2	0	1	1	0	0	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/0	t0023	2198	2	0	0	0	2	0	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/0	t0024	2198	1	1	0	0	0	0	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/0	t0025	2199	1	0	0	0	0	1	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/0	t0026	2198	1	0	0	0	0	1	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/0	t0027	2198	1	1	0	0	0	0	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/0	t0028	2198	1	0	0	0	0	1	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/0	t0029	2198	1	0	0	0	0	1	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/0	t0030	2198	1	0	0	1	0	0	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/0	t0031	2198	1	0	0	1	0	0	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/0	t0032	2197	1	0	0	1	0	0	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/0	t0033	2198	1	0	0	0	0	1	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/0	t0034	2197	1	0	1	0	0	0	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/0	t0035	2197	1	1	0	0	0	0	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/0	t0036	2205	1	0	0	1	0	0	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/0	t0037	2198	1	0	0	0	0	1	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/0	t0038	2198	1	1	0	0	0	0	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/0	t0039	2199	1	0	0	0	0	1	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/0	t0040	2200	1	0	0	1	0	0	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/0	t0041	2198	1	0	0	0	0	1	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/0	t0042	2199	1	1	0	0	0	0	copy fasta	PNPT1	chr2	55629061	55698844
PNP_chr14_20464406_20482089	1/1	t0001	608	425	87	74	209	18	35	copy fasta	PNP	chr14	20464406	20482089
PNP_chr14_20464406_20482089	0/0	t0002	608	12	2	3	6	0	1	copy fasta	PNP	chr14	20464406	20482089
PNP_chr14_20464406_20482089	0/0	t0003	608	4	4	0	0	0	0	copy fasta	PNP	chr14	20464406	20482089
PNP_chr14_20464406_20482089	0/0	t0004	608	2	0	0	0	0	2	copy fasta	PNP	chr14	20464406	20482089
PNP_chr14_20464406_20482089	0/0	t0005	608	2	1	1	0	0	0	copy fasta	PNP	chr14	20464406	20482089
PNP_chr14_20464406_20482089	0/0	t0006	608	1	0	0	1	0	0	copy fasta	PNP	chr14	20464406	20482089
PNP_chr14_20464406_20482089	0/0	t0007	608	1	1	0	0	0	0	copy fasta	PNP	chr14	20464406	20482089
PNP_chr14_20464406_20482089	0/0	t0008	608	1	1	0	0	0	0	copy fasta	PNP	chr14	20464406	20482089
PNRC1_chr6_89075751_89090160	0/1	t0001	1105	262	45	49	126	9	32	copy fasta	PNRC1	chr6	89075751	89090160
PNRC1_chr6_89075751_89090160	1/0	t0002	1109	81	14	25	33	5	3	copy fasta	PNRC1	chr6	89075751	89090160
PNRC1_chr6_89075751_89090160	0/0	t0003	1105	23	16	1	5	0	1	copy fasta	PNRC1	chr6	89075751	89090160
PNRC1_chr6_89075751_89090160	0/0	t0004	1110	9	8	1	0	0	0	copy fasta	PNRC1	chr6	89075751	89090160
PNRC1_chr6_89075751_89090160	0/0	t0005	1105	5	5	0	0	0	0	copy fasta	PNRC1	chr6	89075751	89090160
PNRC1_chr6_89075751_89090160	0/0	t0006	1105	2	0	0	2	0	0	copy fasta	PNRC1	chr6	89075751	89090160
PNRC1_chr6_89075751_89090160	0/0	t0007	1105	2	0	0	0	2	0	copy fasta	PNRC1	chr6	89075751	89090160
PNRC1_chr6_89075751_89090160	0/0	t0008	1105	1	1	0	0	0	0	copy fasta	PNRC1	chr6	89075751	89090160
PNRC1_chr6_89075751_89090160	0/0	t0009	1105	1	1	0	0	0	0	copy fasta	PNRC1	chr6	89075751	89090160
PNRC1_chr6_89075751_89090160	0/0	t0010	1105	1	0	0	1	0	0	copy fasta	PNRC1	chr6	89075751	89090160
PNRC1_chr6_89075751_89090160	0/0	t0011	1105	1	0	0	0	0	1	copy fasta	PNRC1	chr6	89075751	89090160
PNRC1_chr6_89075751_89090160	0/0	t0012	1106	1	1	0	0	0	0	copy fasta	PNRC1	chr6	89075751	89090160
PNRC1_chr6_89075751_89090160	0/0	t0013	1105	1	0	0	1	0	0	copy fasta	PNRC1	chr6	89075751	89090160
PNRC1_chr6_89075751_89090160	0/0	t0014	1105	1	0	1	0	0	0	copy fasta	PNRC1	chr6	89075751	89090160
PNRC1_chr6_89075751_89090160	0/0	t0015	1105	1	0	0	0	0	1	copy fasta	PNRC1	chr6	89075751	89090160
PNRC1_chr6_89075751_89090160	0/0	t0016	1110	1	1	0	0	0	0	copy fasta	PNRC1	chr6	89075751	89090160
PNRC1_chr6_89075751_89090160	0/0	t0017	1109	1	0	1	0	0	0	copy fasta	PNRC1	chr6	89075751	89090160
PNRC1_chr6_89075751_89090160	0/0	t0018	1084	1	1	0	0	0	0	copy fasta	PNRC1	chr6	89075751	89090160
PNRC1_chr6_89075751_89090160	0/0	t0019	1105	1	1	0	0	0	0	copy fasta	PNRC1	chr6	89075751	89090160
PNRC2_chr1_23954828_23968462	0/0	t0001	1977	151	22	32	66	4	27	copy fasta	PNRC2	chr1	23954828	23968462
PNRC2_chr1_23954828_23968462	0/0	t0002	1975	112	1	20	71	7	13	copy fasta	PNRC2	chr1	23954828	23968462