JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PNRC2_chr1_23954828_23968462	0/0	t0003	1981	73	18	9	46	0	0	copy fasta	PNRC2	chr1	23954828	23968462
PNRC2_chr1_23954828_23968462	0/0	t0004	1976	18	12	3	0	1	2	copy fasta	PNRC2	chr1	23954828	23968462
PNRC2_chr1_23954828_23968462	0/0	t0005	1977	15	5	7	0	2	1	copy fasta	PNRC2	chr1	23954828	23968462
PNRC2_chr1_23954828_23968462	0/0	t0006	1978	11	10	1	0	0	0	copy fasta	PNRC2	chr1	23954828	23968462
PNRC2_chr1_23954828_23968462	1/1	t0007	1981	9	6	1	0	0	0	copy fasta	PNRC2	chr1	23954828	23968462
PNRC2_chr1_23954828_23968462	0/0	t0008	1978	4	4	0	0	0	0	copy fasta	PNRC2	chr1	23954828	23968462
PNRC2_chr1_23954828_23968462	0/0	t0009	1977	3	3	0	0	0	0	copy fasta	PNRC2	chr1	23954828	23968462
PNRC2_chr1_23954828_23968462	0/0	t0010	1974	3	3	0	0	0	0	copy fasta	PNRC2	chr1	23954828	23968462
PNRC2_chr1_23954828_23968462	0/0	t0011	1977	2	2	0	0	0	0	copy fasta	PNRC2	chr1	23954828	23968462
PNRC2_chr1_23954828_23968462	0/0	t0012	1977	2	1	1	0	0	0	copy fasta	PNRC2	chr1	23954828	23968462
PNRC2_chr1_23954828_23968462	0/0	t0013	1976	2	2	0	0	0	0	copy fasta	PNRC2	chr1	23954828	23968462
PNRC2_chr1_23954828_23968462	0/0	t0014	1981	1	0	0	1	0	0	copy fasta	PNRC2	chr1	23954828	23968462
PNRC2_chr1_23954828_23968462	0/0	t0015	1981	1	0	0	1	0	0	copy fasta	PNRC2	chr1	23954828	23968462
PNRC2_chr1_23954828_23968462	0/0	t0016	1977	1	0	0	1	0	0	copy fasta	PNRC2	chr1	23954828	23968462
PNRC2_chr1_23954828_23968462	0/0	t0017	1977	1	0	0	0	0	1	copy fasta	PNRC2	chr1	23954828	23968462
PNRC2_chr1_23954828_23968462	0/0	t0018	1976	1	1	0	0	0	0	copy fasta	PNRC2	chr1	23954828	23968462
PNRC2_chr1_23954828_23968462	0/0	t0019	1975	1	0	0	1	0	0	copy fasta	PNRC2	chr1	23954828	23968462
PNRC2_chr1_23954828_23968462	0/0	t0020	1975	1	0	0	1	0	0	copy fasta	PNRC2	chr1	23954828	23968462
POC1A_chr3_52070226_52159423	1/0	t0001	713	146	29	33	59	6	18	copy fasta	POC1A	chr3	52070226	52159423
POC1A_chr3_52070226_52159423	0/0	t0002	713	75	8	14	48	0	5	copy fasta	POC1A	chr3	52070226	52159423
POC1A_chr3_52070226_52159423	0/1	t0003	713	44	24	3	12	2	2	copy fasta	POC1A	chr3	52070226	52159423
POC1A_chr3_52070226_52159423	0/0	t0004	713	4	4	0	0	0	0	copy fasta	POC1A	chr3	52070226	52159423
POC1A_chr3_52070226_52159423	0/0	t0005	713	4	1	0	3	0	0	copy fasta	POC1A	chr3	52070226	52159423
POC1A_chr3_52070226_52159423	0/0	t0006	713	4	0	0	2	0	2	copy fasta	POC1A	chr3	52070226	52159423
POC1A_chr3_52070226_52159423	0/0	t0007	713	4	4	0	0	0	0	copy fasta	POC1A	chr3	52070226	52159423
POC1A_chr3_52070226_52159423	0/0	t0008	713	2	0	0	2	0	0	copy fasta	POC1A	chr3	52070226	52159423
POC1A_chr3_52070226_52159423	0/0	t0009	713	1	0	0	0	0	1	copy fasta	POC1A	chr3	52070226	52159423
POC1A_chr3_52070226_52159423	0/0	t0010	713	1	1	0	0	0	0	copy fasta	POC1A	chr3	52070226	52159423
POC1A_chr3_52070226_52159423	0/0	t0011	713	1	1	0	0	0	0	copy fasta	POC1A	chr3	52070226	52159423
POC1B_chr12_89414718_89531047	1/1	t0001	1588	288	60	61	130	10	25	copy fasta	POC1B	chr12	89414718	89531047
POC1B_chr12_89414718_89531047	0/0	t0002	1583	53	1	3	38	0	11	copy fasta	POC1B	chr12	89414718	89531047
POC1B_chr12_89414718_89531047	0/0	t0003	1588	4	4	0	0	0	0	copy fasta	POC1B	chr12	89414718	89531047
POC1B_chr12_89414718_89531047	0/0	t0004	1588	3	2	1	0	0	0	copy fasta	POC1B	chr12	89414718	89531047
POC1B_chr12_89414718_89531047	0/0	t0005	1588	3	3	0	0	0	0	copy fasta	POC1B	chr12	89414718	89531047
POC1B_chr12_89414718_89531047	0/0	t0006	1588	3	1	2	0	0	0	copy fasta	POC1B	chr12	89414718	89531047
POC1B_chr12_89414718_89531047	0/0	t0007	1583	3	0	0	3	0	0	copy fasta	POC1B	chr12	89414718	89531047
POC1B_chr12_89414718_89531047	0/0	t0008	1587	3	3	0	0	0	0	copy fasta	POC1B	chr12	89414718	89531047
POC1B_chr12_89414718_89531047	0/0	t0009	1588	2	2	0	0	0	0	copy fasta	POC1B	chr12	89414718	89531047
POC1B_chr12_89414718_89531047	0/0	t0010	1588	2	2	0	0	0	0	copy fasta	POC1B	chr12	89414718	89531047
POC1B_chr12_89414718_89531047	0/0	t0011	1588	2	1	1	0	0	0	copy fasta	POC1B	chr12	89414718	89531047
POC1B_chr12_89414718_89531047	0/0	t0012	1587	1	1	0	0	0	0	copy fasta	POC1B	chr12	89414718	89531047
POC1B_chr12_89414718_89531047	0/0	t0013	1574	1	1	0	0	0	0	copy fasta	POC1B	chr12	89414718	89531047
POC1B_chr12_89414718_89531047	0/0	t0014	1588	1	0	0	1	0	0	copy fasta	POC1B	chr12	89414718	89531047
POC1B_chr12_89414718_89531047	0/0	t0015	1588	1	1	0	0	0	0	copy fasta	POC1B	chr12	89414718	89531047
POC5_chr5_75669124_75722437	1/1	t0001	458	218	39	46	96	10	25	copy fasta	POC5	chr5	75669124	75722437
POC5_chr5_75669124_75722437	0/0	t0002	458	113	26	15	59	2	11	copy fasta	POC5	chr5	75669124	75722437
POC5_chr5_75669124_75722437	0/0	t0003	458	22	17	5	0	0	0	copy fasta	POC5	chr5	75669124	75722437
POC5_chr5_75669124_75722437	0/0	t0004	458	20	0	0	18	0	2	copy fasta	POC5	chr5	75669124	75722437
POC5_chr5_75669124_75722437	0/0	t0005	461	7	0	0	7	0	0	copy fasta	POC5	chr5	75669124	75722437
PODNL1_chr19_13926187_13943417	0/0	t0001	787	166	43	20	71	9	23	copy fasta	PODNL1	chr19	13926187	13943417