JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PODNL1_chr19_13926187_13943417	1/1	t0002	787	136	12	41	67	3	11	copy fasta	PODNL1	chr19	13926187	13943417
PODNL1_chr19_13926187_13943417	0/0	t0003	787	110	32	21	44	3	10	copy fasta	PODNL1	chr19	13926187	13943417
PODNL1_chr19_13926187_13943417	0/0	t0004	787	4	4	0	0	0	0	copy fasta	PODNL1	chr19	13926187	13943417
PODNL1_chr19_13926187_13943417	0/0	t0005	787	3	0	0	0	1	2	copy fasta	PODNL1	chr19	13926187	13943417
PODNL1_chr19_13926187_13943417	0/0	t0006	787	2	2	0	0	0	0	copy fasta	PODNL1	chr19	13926187	13943417
PODNL1_chr19_13926187_13943417	0/0	t0007	787	2	0	0	2	0	0	copy fasta	PODNL1	chr19	13926187	13943417
PODNL1_chr19_13926187_13943417	0/0	t0008	787	2	2	0	0	0	0	copy fasta	PODNL1	chr19	13926187	13943417
PODNL1_chr19_13926187_13943417	0/0	t0009	787	1	0	0	1	0	0	copy fasta	PODNL1	chr19	13926187	13943417
PODNL1_chr19_13926187_13943417	0/0	t0010	787	1	0	0	1	0	0	copy fasta	PODNL1	chr19	13926187	13943417
PODNL1_chr19_13926187_13943417	0/0	t0011	787	1	0	0	0	0	1	copy fasta	PODNL1	chr19	13926187	13943417
PODNL1_chr19_13926187_13943417	0/0	t0012	787	1	0	0	1	0	0	copy fasta	PODNL1	chr19	13926187	13943417
PODNL1_chr19_13926187_13943417	0/0	t0013	787	1	0	0	0	0	1	copy fasta	PODNL1	chr19	13926187	13943417
PODNL1_chr19_13926187_13943417	0/0	t0014	787	1	1	0	0	0	0	copy fasta	PODNL1	chr19	13926187	13943417
PODNL1_chr19_13926187_13943417	0/0	t0015	787	1	0	0	1	0	0	copy fasta	PODNL1	chr19	13926187	13943417
PODN_chr1_53057213_53090494	0/0	t0001	1161	125	5	15	85	4	16	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	t0002	1161	48	39	3	5	0	1	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	t0003	1161	46	11	15	17	0	3	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	t0004	1161	44	6	21	4	3	10	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	t0005	1161	39	2	0	35	1	1	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	t0006	1161	22	8	6	6	0	2	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	t0007	1161	17	16	1	0	0	0	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	t0008	1161	11	0	0	6	0	5	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	t0009	1161	8	0	4	4	0	0	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	t0010	1161	7	1	1	4	0	1	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	t0011	1161	7	0	2	4	1	0	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	t0012	1161	5	0	0	5	0	0	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	t0013	1161	2	0	0	2	0	0	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	t0014	1161	2	2	0	0	0	0	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	t0015	1161	1	1	0	0	0	0	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	t0016	1161	1	0	0	0	0	1	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	t0017	1161	1	1	0	0	0	0	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	t0018	1161	1	0	1	0	0	0	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	t0019	1161	1	1	0	0	0	0	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	t0020	1161	1	0	1	0	0	0	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	t0021	1161	1	0	0	0	1	0	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	t0022	1161	1	1	0	0	0	0	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	t0023	1161	1	0	0	0	0	1	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	t0024	1161	1	0	0	1	0	0	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	t0025	1161	1	0	0	1	0	0	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	t0026	1161	1	1	0	0	0	0	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	t0027	1161	1	1	0	0	0	0	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	t0028	1161	1	0	0	1	0	0	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	t0029	1161	1	0	0	1	0	0	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	t0030	1161	1	0	0	1	0	0	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	1/0	t0031	1161	1	0	0	0	0	0	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/1	t0032	1161	1	0	0	0	0	0	copy fasta	PODN	chr1	53057213	53090494
PODN_chr1_53057213_53090494	0/0	t0033	1161	1	0	0	0	0	1	copy fasta	PODN	chr1	53057213	53090494
PODXL2_chr3_127624185_127677802	1/1	t0001	358	326	49	59	166	15	35	copy fasta	PODXL2	chr3	127624185	127677802
PODXL2_chr3_127624185_127677802	0/0	t0002	358	35	29	3	1	0	2	copy fasta	PODXL2	chr3	127624185	127677802
PODXL2_chr3_127624185_127677802	0/0	t0003	358	25	1	12	2	3	7	copy fasta	PODXL2	chr3	127624185	127677802