JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PODXL2_chr3_127624185_127677802	0/0	t0004	358	7	6	1	0	0	0	copy fasta	PODXL2	chr3	127624185	127677802
PODXL2_chr3_127624185_127677802	0/0	t0005	358	5	4	1	0	0	0	copy fasta	PODXL2	chr3	127624185	127677802
PODXL2_chr3_127624185_127677802	0/0	t0006	358	2	0	0	2	0	0	copy fasta	PODXL2	chr3	127624185	127677802
PODXL2_chr3_127624185_127677802	0/0	t0007	358	1	0	0	1	0	0	copy fasta	PODXL2	chr3	127624185	127677802
PODXL2_chr3_127624185_127677802	0/0	t0008	358	1	1	0	0	0	0	copy fasta	PODXL2	chr3	127624185	127677802
PODXL_chr7_131495271_131561628	0/1	t0001	4310	143	23	25	79	4	11	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	t0002	4310	82	5	28	33	5	11	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	1/0	t0003	4310	81	15	9	42	3	11	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	t0004	4310	39	2	3	25	1	8	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	t0005	4310	11	0	0	11	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	t0006	4310	8	7	1	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	t0007	4310	7	7	0	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	t0008	4310	6	4	2	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	t0009	4310	6	2	2	0	1	1	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	t0010	4310	5	5	0	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	t0011	4310	5	5	0	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	t0012	4310	4	0	2	1	0	1	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	t0013	4309	3	3	0	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	t0014	4310	3	2	1	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	t0015	4310	3	1	1	0	1	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	t0016	4310	2	1	0	0	0	1	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	t0017	4310	2	0	0	2	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	t0018	4310	2	0	0	1	0	1	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	t0019	4313	2	2	0	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	t0020	4310	2	0	0	2	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	t0021	4310	1	0	1	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	t0022	4310	1	0	0	0	0	1	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	t0023	4313	1	1	0	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	t0024	4310	1	0	0	0	1	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	t0025	4310	1	0	0	0	0	1	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	t0026	4310	1	1	0	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	t0027	4310	1	1	0	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	t0028	4310	1	0	0	1	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	t0029	4310	1	1	0	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	t0030	4310	1	0	0	1	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	t0031	4310	1	0	0	0	0	1	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	t0032	4310	1	1	0	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	t0033	4310	1	0	0	1	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	t0034	4310	1	0	0	1	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	t0035	4310	1	0	0	0	1	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	t0036	4310	1	0	0	0	0	1	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	t0037	4310	1	0	0	0	1	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	t0038	4310	1	1	0	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	t0039	4310	1	0	0	0	0	1	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	t0040	4310	1	1	0	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	t0041	4310	1	0	1	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	t0042	4310	1	1	0	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	t0043	4310	1	1	0	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
PODXL_chr7_131495271_131561628	0/0	t0044	4310	1	1	0	0	0	0	copy fasta	PODXL	chr7	131495271	131561628
POF1B_chrX_85272396_85384665	0/0	t0001	2094	88	19	17	32	4	16	copy fasta	POF1B	chrX	85272396	85384665