Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ACAP3_chr1_1287391_1312930	0/0	t0013	1289	1	0	0	1	0	0	copy fasta	ACAP3	chr1	1287391	1312930
ACAP3_chr1_1287391_1312930	0/0	t0014	1289	1	0	0	1	0	0	copy fasta	ACAP3	chr1	1287391	1312930
ACAT1_chr11_108116567_108152603	1/1	t0001	254	195	58	28	87	7	13	copy fasta	ACAT1	chr11	108116567	108152603
ACAT1_chr11_108116567_108152603	0/0	t0002	254	129	3	23	75	7	21	copy fasta	ACAT1	chr11	108116567	108152603
ACAT1_chr11_108116567_108152603	0/0	t0003	254	34	11	6	9	0	8	copy fasta	ACAT1	chr11	108116567	108152603
ACAT1_chr11_108116567_108152603	0/0	t0004	254	14	12	2	0	0	0	copy fasta	ACAT1	chr11	108116567	108152603
ACAT1_chr11_108116567_108152603	0/0	t0005	255	5	0	0	5	0	0	copy fasta	ACAT1	chr11	108116567	108152603
ACAT1_chr11_108116567_108152603	0/0	t0006	255	5	4	1	0	0	0	copy fasta	ACAT1	chr11	108116567	108152603
ACAT1_chr11_108116567_108152603	0/0	t0007	254	4	4	0	0	0	0	copy fasta	ACAT1	chr11	108116567	108152603
ACAT2_chr6_159757045_159784112	1/1	t0001	327	277	76	60	100	11	28	copy fasta	ACAT2	chr6	159757045	159784112
ACAT2_chr6_159757045_159784112	0/0	t0002	327	122	14	18	72	3	15	copy fasta	ACAT2	chr6	159757045	159784112
ACAT2_chr6_159757045_159784112	0/0	t0003	327	3	0	0	0	0	3	copy fasta	ACAT2	chr6	159757045	159784112
ACAT2_chr6_159757045_159784112	0/0	t0004	327	1	0	0	1	0	0	copy fasta	ACAT2	chr6	159757045	159784112
ACAT2_chr6_159757045_159784112	0/0	t0005	327	1	0	0	1	0	0	copy fasta	ACAT2	chr6	159757045	159784112
ACBD3_chr1_226139679_226191741	1/0	t0001	1998	236	35	38	120	10	32	copy fasta	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/0	t0002	1994	69	8	10	42	1	8	copy fasta	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/1	t0003	1993	58	8	24	19	1	5	copy fasta	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/0	t0004	1993	17	16	0	0	0	1	copy fasta	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/0	t0005	1993	5	5	0	0	0	0	copy fasta	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/0	t0006	1999	2	2	0	0	0	0	copy fasta	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/0	t0007	1998	2	0	0	0	0	2	copy fasta	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/0	t0008	1998	2	0	2	0	0	0	copy fasta	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/0	t0009	1998	1	0	0	1	0	0	copy fasta	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/0	t0010	1998	1	1	0	0	0	0	copy fasta	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/0	t0011	1998	1	1	0	0	0	0	copy fasta	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/0	t0012	1998	1	0	0	1	0	0	copy fasta	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/0	t0013	1998	1	0	0	1	0	0	copy fasta	ACBD3	chr1	226139679	226191741
ACBD4_chr17_45130687_45149176	1/1	t0001	910	430	90	75	203	15	45	copy fasta	ACBD4	chr17	45130687	45149176
ACBD4_chr17_45130687_45149176	0/0	t0002	910	10	0	4	0	1	5	copy fasta	ACBD4	chr17	45130687	45149176
ACBD4_chr17_45130687_45149176	0/0	t0003	910	4	0	0	4	0	0	copy fasta	ACBD4	chr17	45130687	45149176
ACBD4_chr17_45130687_45149176	0/0	t0004	910	2	0	0	2	0	0	copy fasta	ACBD4	chr17	45130687	45149176
ACBD4_chr17_45130687_45149176	0/0	t0005	910	2	2	0	0	0	0	copy fasta	ACBD4	chr17	45130687	45149176
ACBD4_chr17_45130687_45149176	0/0	t0006	910	1	1	0	0	0	0	copy fasta	ACBD4	chr17	45130687	45149176
ACBD4_chr17_45130687_45149176	0/0	t0007	910	1	0	0	1	0	0	copy fasta	ACBD4	chr17	45130687	45149176
ACBD4_chr17_45130687_45149176	0/0	t0008	910	1	0	1	0	0	0	copy fasta	ACBD4	chr17	45130687	45149176
ACBD4_chr17_45130687_45149176	0/0	t0009	910	1	1	0	0	0	0	copy fasta	ACBD4	chr17	45130687	45149176
ACBD5_chr10_27190214_27245797	0/1	t0001	2324	191	23	39	104	5	19	copy fasta	ACBD5	chr10	27190214	27245797
ACBD5_chr10_27190214_27245797	0/0	t0002	2326	99	20	16	48	3	12	copy fasta	ACBD5	chr10	27190214	27245797
ACBD5_chr10_27190214_27245797	0/0	t0003	2325	29	27	2	0	0	0	copy fasta	ACBD5	chr10	27190214	27245797
ACBD5_chr10_27190214_27245797	0/0	t0004	2325	24	0	0	23	0	1	copy fasta	ACBD5	chr10	27190214	27245797
ACBD5_chr10_27190214_27245797	0/0	t0005	2326	14	10	2	0	0	2	copy fasta	ACBD5	chr10	27190214	27245797
ACBD5_chr10_27190214_27245797	0/0	t0006	2326	4	0	0	4	0	0	copy fasta	ACBD5	chr10	27190214	27245797
ACBD5_chr10_27190214_27245797	1/0	t0007	2326	4	2	1	0	0	0	copy fasta	ACBD5	chr10	27190214	27245797
ACBD5_chr10_27190214_27245797	0/0	t0008	2326	4	4	0	0	0	0	copy fasta	ACBD5	chr10	27190214	27245797
ACBD5_chr10_27190214_27245797	0/0	t0009	2326	2	0	0	0	2	0	copy fasta	ACBD5	chr10	27190214	27245797
ACBD5_chr10_27190214_27245797	0/0	t0010	2326	2	2	0	0	0	0	copy fasta	ACBD5	chr10	27190214	27245797
ACBD5_chr10_27190214_27245797	0/0	t0011	2324	2	0	2	0	0	0	copy fasta	ACBD5	chr10	27190214	27245797
ACBD5_chr10_27190214_27245797	0/0	t0012	2324	1	1	0	0	0	0	copy fasta	ACBD5	chr10	27190214	27245797
ACBD5_chr10_27190214_27245797	0/0	t0013	2324	1	0	0	1	0	0	copy fasta	ACBD5	chr10	27190214	27245797
ACBD5_chr10_27190214_27245797	0/0	t0014	2326	1	1	0	0	0	0	copy fasta	ACBD5	chr10	27190214	27245797