Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATP13A4_chr3_193393967_193559895	0/0	t0017	3782	2	2	0	0	0	0	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A4_chr3_193393967_193559895	0/0	t0018	3782	2	2	0	0	0	0	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A4_chr3_193393967_193559895	0/0	t0019	3780	1	0	0	1	0	0	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A4_chr3_193393967_193559895	0/0	t0020	3785	1	1	0	0	0	0	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A4_chr3_193393967_193559895	0/0	t0021	3785	1	0	1	0	0	0	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A4_chr3_193393967_193559895	0/0	t0022	3781	1	0	0	0	0	1	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A4_chr3_193393967_193559895	0/0	t0023	3782	1	0	0	0	0	1	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A4_chr3_193393967_193559895	0/0	t0024	3781	1	1	0	0	0	0	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A4_chr3_193393967_193559895	0/0	t0025	3784	1	1	0	0	0	0	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A4_chr3_193393967_193559895	0/0	t0026	3784	1	0	0	1	0	0	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A4_chr3_193393967_193559895	0/0	t0027	3783	1	1	0	0	0	0	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A4_chr3_193393967_193559895	0/0	t0028	3783	1	0	1	0	0	0	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A4_chr3_193393967_193559895	0/0	t0029	3784	1	1	0	0	0	0	copy fasta	ATP13A4	chr3	193393967	193559895
ATP13A5_chr3_193269789_193383753	0/1	t0001	282	193	54	40	79	3	16	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	1/0	t0002	282	89	29	18	27	2	12	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	t0003	282	1	1	0	0	0	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP13A5_chr3_193269789_193383753	0/0	t0004	282	1	0	0	0	1	0	copy fasta	ATP13A5	chr3	193269789	193383753
ATP1A1_chr1_116368244_116409774	1/1	t0001	599	244	39	45	121	12	25	copy fasta	ATP1A1	chr1	116368244	116409774
ATP1A1_chr1_116368244_116409774	0/0	t0002	599	80	51	9	17	0	3	copy fasta	ATP1A1	chr1	116368244	116409774
ATP1A1_chr1_116368244_116409774	0/0	t0003	599	5	0	0	3	0	2	copy fasta	ATP1A1	chr1	116368244	116409774
ATP1A1_chr1_116368244_116409774	0/0	t0004	600	5	5	0	0	0	0	copy fasta	ATP1A1	chr1	116368244	116409774
ATP1A1_chr1_116368244_116409774	0/0	t0005	599	1	0	0	1	0	0	copy fasta	ATP1A1	chr1	116368244	116409774
ATP1A1_chr1_116368244_116409774	0/0	t0006	599	1	1	0	0	0	0	copy fasta	ATP1A1	chr1	116368244	116409774
ATP1A2_chr1_160110759_160148591	1/1	t0001	2373	187	13	41	105	8	18	copy fasta	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	t0002	2372	80	12	8	45	3	12	copy fasta	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	t0003	2373	35	1	8	22	0	4	copy fasta	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	t0004	2372	17	13	1	0	0	3	copy fasta	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	t0005	2373	14	9	3	0	1	1	copy fasta	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	t0006	2373	12	1	4	2	2	3	copy fasta	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	t0007	2373	11	0	4	6	0	1	copy fasta	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	t0008	2372	10	7	1	2	0	0	copy fasta	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	t0009	2373	8	8	0	0	0	0	copy fasta	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	t0010	2372	7	5	2	0	0	0	copy fasta	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	t0011	2372	6	6	0	0	0	0	copy fasta	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	t0012	2373	5	5	0	0	0	0	copy fasta	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	t0013	2373	3	0	0	3	0	0	copy fasta	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	t0014	2372	3	3	0	0	0	0	copy fasta	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	t0015	2373	3	3	0	0	0	0	copy fasta	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	t0016	2373	1	1	0	0	0	0	copy fasta	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	t0017	2373	1	0	0	1	0	0	copy fasta	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	t0018	2373	1	0	0	1	0	0	copy fasta	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	t0019	2372	1	0	0	1	0	0	copy fasta	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	t0020	2372	1	0	0	1	0	0	copy fasta	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	t0021	2373	1	1	0	0	0	0	copy fasta	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	t0022	2373	1	1	0	0	0	0	copy fasta	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	t0023	2373	1	0	0	1	0	0	copy fasta	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	t0024	2373	1	1	0	0	0	0	copy fasta	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	t0025	2372	1	1	0	0	0	0	copy fasta	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	t0026	2373	1	1	0	0	0	0	copy fasta	ATP1A2	chr1	160110759	160148591
ATP1A2_chr1_160110759_160148591	0/0	t0027	2372	1	1	0	0	0	0	copy fasta	ATP1A2	chr1	160110759	160148591