JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
POF1B_chrX_85272396_85384665	0/0	t0002	2094	55	7	6	41	0	1	copy fasta	POF1B	chrX	85272396	85384665
POF1B_chrX_85272396_85384665	0/1	t0003	2094	34	13	5	8	3	4	copy fasta	POF1B	chrX	85272396	85384665
POF1B_chrX_85272396_85384665	0/0	t0004	2094	28	17	2	7	0	2	copy fasta	POF1B	chrX	85272396	85384665
POF1B_chrX_85272396_85384665	0/0	t0005	2094	5	5	0	0	0	0	copy fasta	POF1B	chrX	85272396	85384665
POF1B_chrX_85272396_85384665	0/0	t0006	2094	2	2	0	0	0	0	copy fasta	POF1B	chrX	85272396	85384665
POF1B_chrX_85272396_85384665	0/0	t0007	2094	2	2	0	0	0	0	copy fasta	POF1B	chrX	85272396	85384665
POF1B_chrX_85272396_85384665	0/0	t0008	2095	2	0	1	1	0	0	copy fasta	POF1B	chrX	85272396	85384665
POF1B_chrX_85272396_85384665	0/0	t0009	2095	2	1	0	1	0	0	copy fasta	POF1B	chrX	85272396	85384665
POF1B_chrX_85272396_85384665	0/0	t0010	2094	1	1	0	0	0	0	copy fasta	POF1B	chrX	85272396	85384665
POF1B_chrX_85272396_85384665	0/0	t0011	2094	1	0	0	0	0	1	copy fasta	POF1B	chrX	85272396	85384665
POF1B_chrX_85272396_85384665	0/0	t0012	2094	1	0	0	1	0	0	copy fasta	POF1B	chrX	85272396	85384665
POF1B_chrX_85272396_85384665	0/0	t0013	2094	1	1	0	0	0	0	copy fasta	POF1B	chrX	85272396	85384665
POF1B_chrX_85272396_85384665	0/0	t0014	2094	1	0	0	1	0	0	copy fasta	POF1B	chrX	85272396	85384665
POF1B_chrX_85272396_85384665	0/0	t0015	2094	1	1	0	0	0	0	copy fasta	POF1B	chrX	85272396	85384665
POF1B_chrX_85272396_85384665	0/0	t0016	2095	1	1	0	0	0	0	copy fasta	POF1B	chrX	85272396	85384665
POF1B_chrX_85272396_85384665	0/0	t0017	2095	1	0	0	1	0	0	copy fasta	POF1B	chrX	85272396	85384665
POF1B_chrX_85272396_85384665	1/0	t0018	2094	1	0	0	0	0	0	copy fasta	POF1B	chrX	85272396	85384665
POFUT1_chr20_32202880_32243658	1/1	t0001	4060	232	47	45	105	8	25	copy fasta	POFUT1	chr20	32202880	32243658
POFUT1_chr20_32202880_32243658	0/0	t0002	4060	12	1	5	6	0	0	copy fasta	POFUT1	chr20	32202880	32243658
POFUT1_chr20_32202880_32243658	0/0	t0003	4059	11	11	0	0	0	0	copy fasta	POFUT1	chr20	32202880	32243658
POFUT1_chr20_32202880_32243658	0/0	t0004	4060	8	0	0	8	0	0	copy fasta	POFUT1	chr20	32202880	32243658
POFUT1_chr20_32202880_32243658	0/0	t0005	4060	7	6	1	0	0	0	copy fasta	POFUT1	chr20	32202880	32243658
POFUT1_chr20_32202880_32243658	0/0	t0006	4059	7	7	0	0	0	0	copy fasta	POFUT1	chr20	32202880	32243658
POFUT1_chr20_32202880_32243658	0/0	t0007	4060	6	1	0	5	0	0	copy fasta	POFUT1	chr20	32202880	32243658
POFUT1_chr20_32202880_32243658	0/0	t0008	4060	6	6	0	0	0	0	copy fasta	POFUT1	chr20	32202880	32243658
POFUT1_chr20_32202880_32243658	0/0	t0009	4060	4	1	3	0	0	0	copy fasta	POFUT1	chr20	32202880	32243658
POFUT1_chr20_32202880_32243658	0/0	t0010	4057	4	3	1	0	0	0	copy fasta	POFUT1	chr20	32202880	32243658
POFUT1_chr20_32202880_32243658	0/0	t0011	4060	3	0	0	3	0	0	copy fasta	POFUT1	chr20	32202880	32243658
POFUT1_chr20_32202880_32243658	0/0	t0012	4060	3	0	3	0	0	0	copy fasta	POFUT1	chr20	32202880	32243658
POFUT1_chr20_32202880_32243658	0/0	t0013	4060	2	2	0	0	0	0	copy fasta	POFUT1	chr20	32202880	32243658
POFUT1_chr20_32202880_32243658	0/0	t0014	4060	2	0	0	0	0	2	copy fasta	POFUT1	chr20	32202880	32243658
POFUT1_chr20_32202880_32243658	0/0	t0015	4060	1	0	0	1	0	0	copy fasta	POFUT1	chr20	32202880	32243658
POFUT1_chr20_32202880_32243658	0/0	t0016	4060	1	0	1	0	0	0	copy fasta	POFUT1	chr20	32202880	32243658
POFUT1_chr20_32202880_32243658	0/0	t0017	4060	1	1	0	0	0	0	copy fasta	POFUT1	chr20	32202880	32243658
POFUT1_chr20_32202880_32243658	0/0	t0018	4060	1	0	0	0	0	1	copy fasta	POFUT1	chr20	32202880	32243658
POFUT1_chr20_32202880_32243658	0/0	t0019	4060	1	0	1	0	0	0	copy fasta	POFUT1	chr20	32202880	32243658
POFUT1_chr20_32202880_32243658	0/0	t0020	4060	1	1	0	0	0	0	copy fasta	POFUT1	chr20	32202880	32243658
POFUT1_chr20_32202880_32243658	0/0	t0021	4060	1	1	0	0	0	0	copy fasta	POFUT1	chr20	32202880	32243658
POFUT1_chr20_32202880_32243658	0/0	t0022	4060	1	0	0	0	1	0	copy fasta	POFUT1	chr20	32202880	32243658
POFUT1_chr20_32202880_32243658	0/0	t0023	4060	1	0	0	1	0	0	copy fasta	POFUT1	chr20	32202880	32243658
POFUT1_chr20_32202880_32243658	0/0	t0024	4060	1	0	0	0	0	1	copy fasta	POFUT1	chr20	32202880	32243658
POFUT1_chr20_32202880_32243658	0/0	t0025	4060	1	0	0	1	0	0	copy fasta	POFUT1	chr20	32202880	32243658
POFUT1_chr20_32202880_32243658	0/0	t0026	4060	1	0	0	0	1	0	copy fasta	POFUT1	chr20	32202880	32243658
POFUT1_chr20_32202880_32243658	0/0	t0027	4060	1	0	0	0	0	1	copy fasta	POFUT1	chr20	32202880	32243658
POFUT1_chr20_32202880_32243658	0/0	t0028	4060	1	0	0	1	0	0	copy fasta	POFUT1	chr20	32202880	32243658
POFUT1_chr20_32202880_32243658	0/0	t0029	4060	1	0	0	1	0	0	copy fasta	POFUT1	chr20	32202880	32243658
POFUT2_chr21_45258935_45292895	1/0	t0001	1572	205	25	50	99	11	19	copy fasta	POFUT2	chr21	45258935	45292895
POFUT2_chr21_45258935_45292895	0/1	t0002	1576	154	26	22	81	3	21	copy fasta	POFUT2	chr21	45258935	45292895
POFUT2_chr21_45258935_45292895	0/0	t0003	1576	10	5	0	1	2	2	copy fasta	POFUT2	chr21	45258935	45292895
POFUT2_chr21_45258935_45292895	0/0	t0004	1572	8	0	0	8	0	0	copy fasta	POFUT2	chr21	45258935	45292895