JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
POFUT2_chr21_45258935_45292895	0/0	t0005	1576	7	6	1	0	0	0	copy fasta	POFUT2	chr21	45258935	45292895
POFUT2_chr21_45258935_45292895	0/0	t0006	1576	6	6	0	0	0	0	copy fasta	POFUT2	chr21	45258935	45292895
POFUT2_chr21_45258935_45292895	0/0	t0007	1576	5	4	0	1	0	0	copy fasta	POFUT2	chr21	45258935	45292895
POFUT2_chr21_45258935_45292895	0/0	t0008	1573	5	5	0	0	0	0	copy fasta	POFUT2	chr21	45258935	45292895
POFUT2_chr21_45258935_45292895	0/0	t0009	1576	4	4	0	0	0	0	copy fasta	POFUT2	chr21	45258935	45292895
POFUT2_chr21_45258935_45292895	0/0	t0010	1573	2	2	0	0	0	0	copy fasta	POFUT2	chr21	45258935	45292895
POFUT2_chr21_45258935_45292895	0/0	t0011	1573	2	2	0	0	0	0	copy fasta	POFUT2	chr21	45258935	45292895
POFUT2_chr21_45258935_45292895	0/0	t0012	1576	2	2	0	0	0	0	copy fasta	POFUT2	chr21	45258935	45292895
POFUT2_chr21_45258935_45292895	0/0	t0013	1576	2	2	0	0	0	0	copy fasta	POFUT2	chr21	45258935	45292895
POFUT2_chr21_45258935_45292895	0/0	t0014	1576	2	2	0	0	0	0	copy fasta	POFUT2	chr21	45258935	45292895
POFUT2_chr21_45258935_45292895	0/0	t0015	1576	2	0	1	0	0	1	copy fasta	POFUT2	chr21	45258935	45292895
POFUT2_chr21_45258935_45292895	0/0	t0016	1572	2	0	0	2	0	0	copy fasta	POFUT2	chr21	45258935	45292895
POFUT2_chr21_45258935_45292895	0/0	t0017	1576	2	2	0	0	0	0	copy fasta	POFUT2	chr21	45258935	45292895
POFUT2_chr21_45258935_45292895	0/0	t0018	1576	1	1	0	0	0	0	copy fasta	POFUT2	chr21	45258935	45292895
POFUT2_chr21_45258935_45292895	0/0	t0019	1576	1	0	0	1	0	0	copy fasta	POFUT2	chr21	45258935	45292895
POFUT2_chr21_45258935_45292895	0/0	t0020	1576	1	0	1	0	0	0	copy fasta	POFUT2	chr21	45258935	45292895
POFUT2_chr21_45258935_45292895	0/0	t0021	1576	1	0	0	1	0	0	copy fasta	POFUT2	chr21	45258935	45292895
POFUT2_chr21_45258935_45292895	0/0	t0022	1551	1	1	0	0	0	0	copy fasta	POFUT2	chr21	45258935	45292895
POFUT2_chr21_45258935_45292895	0/0	t0023	1576	1	0	0	1	0	0	copy fasta	POFUT2	chr21	45258935	45292895
POFUT2_chr21_45258935_45292895	0/0	t0024	1576	1	1	0	0	0	0	copy fasta	POFUT2	chr21	45258935	45292895
POFUT2_chr21_45258935_45292895	0/0	t0025	1572	1	0	0	0	0	1	copy fasta	POFUT2	chr21	45258935	45292895
POFUT2_chr21_45258935_45292895	0/0	t0026	1572	1	0	0	1	0	0	copy fasta	POFUT2	chr21	45258935	45292895
POFUT2_chr21_45258935_45292895	0/0	t0027	1547	1	1	0	0	0	0	copy fasta	POFUT2	chr21	45258935	45292895
POFUT2_chr21_45258935_45292895	0/0	t0028	1572	1	1	0	0	0	0	copy fasta	POFUT2	chr21	45258935	45292895
POFUT2_chr21_45258935_45292895	0/0	t0029	1582	1	0	0	1	0	0	copy fasta	POFUT2	chr21	45258935	45292895
POFUT2_chr21_45258935_45292895	0/0	t0030	1572	1	0	0	1	0	0	copy fasta	POFUT2	chr21	45258935	45292895
POFUT2_chr21_45258935_45292895	0/0	t0031	1572	1	1	0	0	0	0	copy fasta	POFUT2	chr21	45258935	45292895
POFUT2_chr21_45258935_45292895	0/0	t0032	1573	1	1	0	0	0	0	copy fasta	POFUT2	chr21	45258935	45292895
POFUT2_chr21_45258935_45292895	0/0	t0033	1573	1	0	1	0	0	0	copy fasta	POFUT2	chr21	45258935	45292895
POGK_chr1_166834475_166861359	0/1	t0001	3921	117	19	24	56	5	12	copy fasta	POGK	chr1	166834475	166861359
POGK_chr1_166834475_166861359	1/0	t0002	3922	71	6	16	27	8	13	copy fasta	POGK	chr1	166834475	166861359
POGK_chr1_166834475_166861359	0/0	t0003	3924	59	0	2	48	0	9	copy fasta	POGK	chr1	166834475	166861359
POGK_chr1_166834475_166861359	0/0	t0004	3923	49	0	7	39	0	3	copy fasta	POGK	chr1	166834475	166861359
POGK_chr1_166834475_166861359	0/0	t0005	3923	37	31	1	0	0	5	copy fasta	POGK	chr1	166834475	166861359
POGK_chr1_166834475_166861359	0/0	t0006	3922	15	0	14	0	1	0	copy fasta	POGK	chr1	166834475	166861359
POGK_chr1_166834475_166861359	0/0	t0007	3924	8	5	3	0	0	0	copy fasta	POGK	chr1	166834475	166861359
POGK_chr1_166834475_166861359	0/0	t0008	3924	8	7	1	0	0	0	copy fasta	POGK	chr1	166834475	166861359
POGK_chr1_166834475_166861359	0/0	t0009	3922	5	5	0	0	0	0	copy fasta	POGK	chr1	166834475	166861359
POGK_chr1_166834475_166861359	0/0	t0010	3923	5	1	2	0	1	1	copy fasta	POGK	chr1	166834475	166861359
POGK_chr1_166834475_166861359	0/0	t0011	3923	2	2	0	0	0	0	copy fasta	POGK	chr1	166834475	166861359
POGK_chr1_166834475_166861359	0/0	t0012	3921	2	2	0	0	0	0	copy fasta	POGK	chr1	166834475	166861359
POGK_chr1_166834475_166861359	0/0	t0013	3922	2	2	0	0	0	0	copy fasta	POGK	chr1	166834475	166861359
POGK_chr1_166834475_166861359	0/0	t0014	3922	2	2	0	0	0	0	copy fasta	POGK	chr1	166834475	166861359
POGK_chr1_166834475_166861359	0/0	t0015	3923	2	0	0	0	0	2	copy fasta	POGK	chr1	166834475	166861359
POGK_chr1_166834475_166861359	0/0	t0016	3923	2	0	1	0	0	1	copy fasta	POGK	chr1	166834475	166861359
POGK_chr1_166834475_166861359	0/0	t0017	3922	2	2	0	0	0	0	copy fasta	POGK	chr1	166834475	166861359
POGK_chr1_166834475_166861359	0/0	t0018	3922	1	1	0	0	0	0	copy fasta	POGK	chr1	166834475	166861359
POGK_chr1_166834475_166861359	0/0	t0019	3921	1	0	0	1	0	0	copy fasta	POGK	chr1	166834475	166861359
POGK_chr1_166834475_166861359	0/0	t0020	3921	1	1	0	0	0	0	copy fasta	POGK	chr1	166834475	166861359
POGK_chr1_166834475_166861359	0/0	t0021	3921	1	0	1	0	0	0	copy fasta	POGK	chr1	166834475	166861359