JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
POGK_chr1_166834475_166861359	0/0	t0022	3920	1	0	0	1	0	0	copy fasta	POGK	chr1	166834475	166861359
POGK_chr1_166834475_166861359	0/0	t0023	3924	1	1	0	0	0	0	copy fasta	POGK	chr1	166834475	166861359
POGK_chr1_166834475_166861359	0/0	t0024	3924	1	0	0	1	0	0	copy fasta	POGK	chr1	166834475	166861359
POGK_chr1_166834475_166861359	0/0	t0025	3925	1	1	0	0	0	0	copy fasta	POGK	chr1	166834475	166861359
POGK_chr1_166834475_166861359	0/0	t0026	3921	1	0	0	0	1	0	copy fasta	POGK	chr1	166834475	166861359
POGK_chr1_166834475_166861359	0/0	t0027	3922	1	1	0	0	0	0	copy fasta	POGK	chr1	166834475	166861359
POGK_chr1_166834475_166861359	0/0	t0028	3924	1	1	0	0	0	0	copy fasta	POGK	chr1	166834475	166861359
POGK_chr1_166834475_166861359	0/0	t0029	3923	1	1	0	0	0	0	copy fasta	POGK	chr1	166834475	166861359
POGK_chr1_166834475_166861359	0/0	t0030	3923	1	1	0	0	0	0	copy fasta	POGK	chr1	166834475	166861359
POGK_chr1_166834475_166861359	0/0	t0031	3923	1	1	0	0	0	0	copy fasta	POGK	chr1	166834475	166861359
POGK_chr1_166834475_166861359	0/0	t0032	3986	1	1	0	0	0	0	copy fasta	POGK	chr1	166834475	166861359
POGK_chr1_166834475_166861359	0/0	t0033	3924	1	1	0	0	0	0	copy fasta	POGK	chr1	166834475	166861359
POGK_chr1_166834475_166861359	0/0	t0034	3923	1	0	0	1	0	0	copy fasta	POGK	chr1	166834475	166861359
POGK_chr1_166834475_166861359	0/0	t0035	3922	1	0	1	0	0	0	copy fasta	POGK	chr1	166834475	166861359
POGK_chr1_166834475_166861359	0/0	t0036	3922	1	0	1	0	0	0	copy fasta	POGK	chr1	166834475	166861359
POGK_chr1_166834475_166861359	0/0	t0037	3922	1	1	0	0	0	0	copy fasta	POGK	chr1	166834475	166861359
POGLUT1_chr3_119463963_119499708	0/0	t0001	2331	55	0	9	41	2	3	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	t0002	2330	52	1	14	28	2	7	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/1	t0003	2332	42	4	15	12	4	6	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	t0004	2332	40	3	8	18	3	8	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	t0005	2333	40	1	4	29	1	5	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	t0006	2334	23	18	2	3	0	0	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	t0007	2332	15	3	0	12	0	0	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	t0008	2335	15	12	2	1	0	0	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	t0009	2333	12	1	2	9	0	0	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	t0010	2332	10	1	2	6	0	1	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	t0011	2342	9	3	0	1	0	5	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	t0012	2333	7	1	0	4	1	1	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	t0013	2329	7	0	5	0	1	1	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	t0014	2334	7	2	1	3	0	1	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	t0015	2334	5	2	0	0	0	3	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	t0016	2333	4	4	0	0	0	0	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	t0017	2333	4	3	1	0	0	0	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	1/0	t0018	2330	4	1	0	0	0	2	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	t0019	2331	4	0	1	3	0	0	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	t0020	2334	3	0	0	2	0	1	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	t0021	2344	3	3	0	0	0	0	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	t0022	2332	3	0	0	3	0	0	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	t0023	2338	3	2	0	0	0	1	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	t0024	2331	3	1	1	1	0	0	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	t0025	2333	3	3	0	0	0	0	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	t0026	2334	2	0	0	1	0	1	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	t0027	2332	2	0	2	0	0	0	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	t0028	2332	2	2	0	0	0	0	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	t0029	2341	2	2	0	0	0	0	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	t0030	2331	2	0	2	0	0	0	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	t0031	2330	2	0	0	2	0	0	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	t0032	2335	2	0	0	2	0	0	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	t0033	2331	2	0	0	2	0	0	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	t0034	2335	2	2	0	0	0	0	copy fasta	POGLUT1	chr3	119463963	119499708