JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
POGLUT1_chr3_119463963_119499708	0/0	t0035	2332	2	2	0	0	0	0	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	t0036	2335	2	0	0	2	0	0	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	t0037	2332	1	0	0	1	0	0	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	t0038	2331	1	0	1	0	0	0	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	t0039	2341	1	1	0	0	0	0	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	t0040	2333	1	1	0	0	0	0	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	t0041	2343	1	1	0	0	0	0	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	t0042	2331	1	1	0	0	0	0	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	t0043	2331	1	0	0	1	0	0	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	t0044	2329	1	0	0	1	0	0	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	t0045	2333	1	0	0	0	0	1	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	t0046	2333	1	0	1	0	0	0	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	t0047	2334	1	0	1	0	0	0	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	t0048	2334	1	1	0	0	0	0	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	t0049	2331	1	1	0	0	0	0	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	t0050	2335	1	1	0	0	0	0	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	t0051	2334	1	1	0	0	0	0	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	t0052	2332	1	0	0	0	0	1	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	t0053	2331	1	0	0	0	0	1	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	t0054	2332	1	0	0	0	0	1	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	t0055	2330	1	0	1	0	0	0	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	t0056	2331	1	1	0	0	0	0	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	t0057	2334	1	1	0	0	0	0	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	t0058	2331	1	0	0	1	0	0	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	t0059	2333	1	1	0	0	0	0	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	t0060	2335	1	1	0	0	0	0	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	t0061	2332	1	1	0	0	0	0	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	t0062	2330	1	0	1	0	0	0	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT1_chr3_119463963_119499708	0/0	t0063	2330	1	0	0	1	0	0	copy fasta	POGLUT1	chr3	119463963	119499708
POGLUT2_chr13_102779281_102803976	1/1	t0001	521	371	65	75	171	14	44	copy fasta	POGLUT2	chr13	102779281	102803976
POGLUT2_chr13_102779281_102803976	0/0	t0002	521	29	8	2	19	0	0	copy fasta	POGLUT2	chr13	102779281	102803976
POGLUT2_chr13_102779281_102803976	0/0	t0003	521	13	10	3	0	0	0	copy fasta	POGLUT2	chr13	102779281	102803976
POGLUT2_chr13_102779281_102803976	0/0	t0004	521	11	0	0	11	0	0	copy fasta	POGLUT2	chr13	102779281	102803976
POGLUT2_chr13_102779281_102803976	0/0	t0005	517	3	3	0	0	0	0	copy fasta	POGLUT2	chr13	102779281	102803976
POGLUT2_chr13_102779281_102803976	0/0	t0006	521	3	1	1	0	0	1	copy fasta	POGLUT2	chr13	102779281	102803976
POGLUT2_chr13_102779281_102803976	0/0	t0007	521	2	0	0	2	0	0	copy fasta	POGLUT2	chr13	102779281	102803976
POGLUT2_chr13_102779281_102803976	0/0	t0008	521	1	0	0	0	0	1	copy fasta	POGLUT2	chr13	102779281	102803976
POGLUT2_chr13_102779281_102803976	0/0	t0009	521	1	1	0	0	0	0	copy fasta	POGLUT2	chr13	102779281	102803976
POGLUT2_chr13_102779281_102803976	0/0	t0010	521	1	0	1	0	0	0	copy fasta	POGLUT2	chr13	102779281	102803976
POGLUT2_chr13_102779281_102803976	0/0	t0011	521	1	0	0	1	0	0	copy fasta	POGLUT2	chr13	102779281	102803976
POGLUT3_chr11_108467116_108503384	1/0	t0001	2730	126	25	19	68	1	12	copy fasta	POGLUT3	chr11	108467116	108503384
POGLUT3_chr11_108467116_108503384	0/1	t0002	2731	112	14	25	50	5	17	copy fasta	POGLUT3	chr11	108467116	108503384
POGLUT3_chr11_108467116_108503384	0/0	t0003	2730	30	26	4	0	0	0	copy fasta	POGLUT3	chr11	108467116	108503384
POGLUT3_chr11_108467116_108503384	0/0	t0004	2731	20	11	1	5	0	3	copy fasta	POGLUT3	chr11	108467116	108503384
POGLUT3_chr11_108467116_108503384	0/0	t0005	2730	14	0	5	3	3	3	copy fasta	POGLUT3	chr11	108467116	108503384
POGLUT3_chr11_108467116_108503384	0/0	t0006	2731	11	0	4	4	3	0	copy fasta	POGLUT3	chr11	108467116	108503384
POGLUT3_chr11_108467116_108503384	0/0	t0007	2723	10	7	0	3	0	0	copy fasta	POGLUT3	chr11	108467116	108503384
POGLUT3_chr11_108467116_108503384	0/0	t0008	2730	3	0	0	3	0	0	copy fasta	POGLUT3	chr11	108467116	108503384
POGLUT3_chr11_108467116_108503384	0/0	t0009	2730	2	0	1	0	0	1	copy fasta	POGLUT3	chr11	108467116	108503384
POGLUT3_chr11_108467116_108503384	0/0	t0010	2731	2	0	0	2	0	0	copy fasta	POGLUT3	chr11	108467116	108503384