JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
POGLUT3_chr11_108467116_108503384	0/0	t0011	2731	2	0	0	2	0	0	copy fasta	POGLUT3	chr11	108467116	108503384
POGLUT3_chr11_108467116_108503384	0/0	t0012	2730	1	1	0	0	0	0	copy fasta	POGLUT3	chr11	108467116	108503384
POGLUT3_chr11_108467116_108503384	0/0	t0013	2730	1	0	0	1	0	0	copy fasta	POGLUT3	chr11	108467116	108503384
POGLUT3_chr11_108467116_108503384	0/0	t0014	2730	1	0	0	0	1	0	copy fasta	POGLUT3	chr11	108467116	108503384
POGLUT3_chr11_108467116_108503384	0/0	t0015	2730	1	1	0	0	0	0	copy fasta	POGLUT3	chr11	108467116	108503384
POGLUT3_chr11_108467116_108503384	0/0	t0016	2731	1	0	0	1	0	0	copy fasta	POGLUT3	chr11	108467116	108503384
POGLUT3_chr11_108467116_108503384	0/0	t0017	2731	1	0	0	0	0	1	copy fasta	POGLUT3	chr11	108467116	108503384
POGLUT3_chr11_108467116_108503384	0/0	t0018	2731	1	1	0	0	0	0	copy fasta	POGLUT3	chr11	108467116	108503384
POGLUT3_chr11_108467116_108503384	0/0	t0019	2731	1	0	0	0	0	1	copy fasta	POGLUT3	chr11	108467116	108503384
POGLUT3_chr11_108467116_108503384	0/0	t0020	2723	1	1	0	0	0	0	copy fasta	POGLUT3	chr11	108467116	108503384
POGLUT3_chr11_108467116_108503384	0/0	t0021	2731	1	0	0	0	1	0	copy fasta	POGLUT3	chr11	108467116	108503384
POGLUT3_chr11_108467116_108503384	0/0	t0022	2731	1	0	1	0	0	0	copy fasta	POGLUT3	chr11	108467116	108503384
POGLUT3_chr11_108467116_108503384	0/0	t0023	2731	1	1	0	0	0	0	copy fasta	POGLUT3	chr11	108467116	108503384
POGZ_chr1_151397724_151464494	0/1	t0001	2422	129	52	21	37	7	11	copy fasta	POGZ	chr1	151397724	151464494
POGZ_chr1_151397724_151464494	0/0	t0002	2423	69	5	11	47	0	6	copy fasta	POGZ	chr1	151397724	151464494
POGZ_chr1_151397724_151464494	0/0	t0003	2422	60	3	10	43	0	4	copy fasta	POGZ	chr1	151397724	151464494
POGZ_chr1_151397724_151464494	0/0	t0004	2422	21	4	9	3	3	2	copy fasta	POGZ	chr1	151397724	151464494
POGZ_chr1_151397724_151464494	0/0	t0005	2422	11	1	4	6	0	0	copy fasta	POGZ	chr1	151397724	151464494
POGZ_chr1_151397724_151464494	1/0	t0006	2422	6	5	0	0	0	0	copy fasta	POGZ	chr1	151397724	151464494
POGZ_chr1_151397724_151464494	0/0	t0007	2423	4	2	0	2	0	0	copy fasta	POGZ	chr1	151397724	151464494
POGZ_chr1_151397724_151464494	0/0	t0008	2421	4	4	0	0	0	0	copy fasta	POGZ	chr1	151397724	151464494
POGZ_chr1_151397724_151464494	0/0	t0009	2423	3	0	0	3	0	0	copy fasta	POGZ	chr1	151397724	151464494
POGZ_chr1_151397724_151464494	0/0	t0010	2422	2	2	0	0	0	0	copy fasta	POGZ	chr1	151397724	151464494
POGZ_chr1_151397724_151464494	0/0	t0011	2405	1	0	0	1	0	0	copy fasta	POGZ	chr1	151397724	151464494
POGZ_chr1_151397724_151464494	0/0	t0012	2423	1	0	0	1	0	0	copy fasta	POGZ	chr1	151397724	151464494
POGZ_chr1_151397724_151464494	0/0	t0013	2423	1	0	0	0	0	1	copy fasta	POGZ	chr1	151397724	151464494
POGZ_chr1_151397724_151464494	0/0	t0014	2423	1	1	0	0	0	0	copy fasta	POGZ	chr1	151397724	151464494
POGZ_chr1_151397724_151464494	0/0	t0015	2423	1	0	0	1	0	0	copy fasta	POGZ	chr1	151397724	151464494
POGZ_chr1_151397724_151464494	0/0	t0016	2422	1	0	0	1	0	0	copy fasta	POGZ	chr1	151397724	151464494
POGZ_chr1_151397724_151464494	0/0	t0017	2422	1	0	0	1	0	0	copy fasta	POGZ	chr1	151397724	151464494
POGZ_chr1_151397724_151464494	0/0	t0018	2422	1	1	0	0	0	0	copy fasta	POGZ	chr1	151397724	151464494
POGZ_chr1_151397724_151464494	0/0	t0019	2422	1	1	0	0	0	0	copy fasta	POGZ	chr1	151397724	151464494
POGZ_chr1_151397724_151464494	0/0	t0020	2422	1	0	1	0	0	0	copy fasta	POGZ	chr1	151397724	151464494
POGZ_chr1_151397724_151464494	0/0	t0021	2422	1	1	0	0	0	0	copy fasta	POGZ	chr1	151397724	151464494
POLA1_chrX_24688918_25001986	1/1	t0001	1081	177	52	28	67	8	20	copy fasta	POLA1	chrX	24688918	25001986
POLA1_chrX_24688918_25001986	0/0	t0002	1081	12	10	2	0	0	0	copy fasta	POLA1	chrX	24688918	25001986
POLA1_chrX_24688918_25001986	0/0	t0003	1081	4	0	1	0	1	2	copy fasta	POLA1	chrX	24688918	25001986
POLA1_chrX_24688918_25001986	0/0	t0004	1081	1	0	0	1	0	0	copy fasta	POLA1	chrX	24688918	25001986
POLA1_chrX_24688918_25001986	0/0	t0005	1081	1	1	0	0	0	0	copy fasta	POLA1	chrX	24688918	25001986
POLA1_chrX_24688918_25001986	0/0	t0006	1079	1	0	0	1	0	0	copy fasta	POLA1	chrX	24688918	25001986
POLA1_chrX_24688918_25001986	0/0	t0007	1081	1	1	0	0	0	0	copy fasta	POLA1	chrX	24688918	25001986
POLA2_chr11_65256962_65303685	1/1	t0001	1748	129	20	25	59	6	17	copy fasta	POLA2	chr11	65256962	65303685
POLA2_chr11_65256962_65303685	0/0	t0002	1748	63	27	14	11	0	11	copy fasta	POLA2	chr11	65256962	65303685
POLA2_chr11_65256962_65303685	0/0	t0003	1748	62	22	7	27	1	5	copy fasta	POLA2	chr11	65256962	65303685
POLA2_chr11_65256962_65303685	0/0	t0004	1747	6	6	0	0	0	0	copy fasta	POLA2	chr11	65256962	65303685
POLA2_chr11_65256962_65303685	0/0	t0005	1748	5	4	1	0	0	0	copy fasta	POLA2	chr11	65256962	65303685
POLA2_chr11_65256962_65303685	0/0	t0006	1748	4	4	0	0	0	0	copy fasta	POLA2	chr11	65256962	65303685
POLA2_chr11_65256962_65303685	0/0	t0007	1748	3	1	2	0	0	0	copy fasta	POLA2	chr11	65256962	65303685
POLA2_chr11_65256962_65303685	0/0	t0008	1748	3	3	0	0	0	0	copy fasta	POLA2	chr11	65256962	65303685
POLA2_chr11_65256962_65303685	0/0	t0009	1748	2	0	0	2	0	0	copy fasta	POLA2	chr11	65256962	65303685