JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
POLA2_chr11_65256962_65303685	0/0	t0010	1748	1	0	0	0	0	1	copy fasta	POLA2	chr11	65256962	65303685
POLA2_chr11_65256962_65303685	0/0	t0011	1748	1	1	0	0	0	0	copy fasta	POLA2	chr11	65256962	65303685
POLA2_chr11_65256962_65303685	0/0	t0012	1748	1	0	1	0	0	0	copy fasta	POLA2	chr11	65256962	65303685
POLA2_chr11_65256962_65303685	0/0	t0013	1748	1	0	0	0	1	0	copy fasta	POLA2	chr11	65256962	65303685
POLA2_chr11_65256962_65303685	0/0	t0014	1748	1	1	0	0	0	0	copy fasta	POLA2	chr11	65256962	65303685
POLA2_chr11_65256962_65303685	0/0	t0015	1748	1	0	0	1	0	0	copy fasta	POLA2	chr11	65256962	65303685
POLA2_chr11_65256962_65303685	0/0	t0016	1748	1	1	0	0	0	0	copy fasta	POLA2	chr11	65256962	65303685
POLB_chr8_42333494_42376808	1/1	t0001	283	307	90	47	120	8	40	copy fasta	POLB	chr8	42333494	42376808
POLB_chr8_42333494_42376808	0/0	t0002	283	4	4	0	0	0	0	copy fasta	POLB	chr8	42333494	42376808
POLB_chr8_42333494_42376808	0/0	t0003	283	2	0	0	2	0	0	copy fasta	POLB	chr8	42333494	42376808
POLB_chr8_42333494_42376808	0/0	t0004	283	1	0	1	0	0	0	copy fasta	POLB	chr8	42333494	42376808
POLD1_chr19_50379347_50423014	1/1	t0001	112	335	98	75	102	12	46	copy fasta	POLD1	chr19	50379347	50423014
POLD1_chr19_50379347_50423014	0/0	t0002	112	1	0	1	0	0	0	copy fasta	POLD1	chr19	50379347	50423014
POLD2_chr7_44109680_44128548	0/0	t0001	200	410	91	65	194	17	43	copy fasta	POLD2	chr7	44109680	44128548
POLD2_chr7_44109680_44128548	0/0	t0002	200	3	0	1	0	0	2	copy fasta	POLD2	chr7	44109680	44128548
POLD2_chr7_44109680_44128548	0/0	t0003	200	2	0	0	0	1	1	copy fasta	POLD2	chr7	44109680	44128548
POLD2_chr7_44109680_44128548	0/0	t0004	200	2	0	0	2	0	0	copy fasta	POLD2	chr7	44109680	44128548
POLD2_chr7_44109680_44128548	0/0	t0005	200	1	1	0	0	0	0	copy fasta	POLD2	chr7	44109680	44128548
POLD3_chr11_74587582_74648076	0/1	t0001	2388	157	43	30	63	7	13	copy fasta	POLD3	chr11	74587582	74648076
POLD3_chr11_74587582_74648076	0/0	t0002	2388	93	18	19	46	3	7	copy fasta	POLD3	chr11	74587582	74648076
POLD3_chr11_74587582_74648076	1/0	t0003	2388	66	0	13	43	3	6	copy fasta	POLD3	chr11	74587582	74648076
POLD3_chr11_74587582_74648076	0/0	t0004	2390	31	4	6	13	1	7	copy fasta	POLD3	chr11	74587582	74648076
POLD3_chr11_74587582_74648076	0/0	t0005	2390	13	4	2	3	0	4	copy fasta	POLD3	chr11	74587582	74648076
POLD3_chr11_74587582_74648076	0/0	t0006	2388	12	11	1	0	0	0	copy fasta	POLD3	chr11	74587582	74648076
POLD3_chr11_74587582_74648076	0/0	t0007	2388	8	0	0	8	0	0	copy fasta	POLD3	chr11	74587582	74648076
POLD3_chr11_74587582_74648076	0/0	t0008	2388	4	4	0	0	0	0	copy fasta	POLD3	chr11	74587582	74648076
POLD3_chr11_74587582_74648076	0/0	t0009	2388	3	3	0	0	0	0	copy fasta	POLD3	chr11	74587582	74648076
POLD3_chr11_74587582_74648076	0/0	t0010	2388	3	2	1	0	0	0	copy fasta	POLD3	chr11	74587582	74648076
POLD3_chr11_74587582_74648076	0/0	t0011	2388	2	0	1	0	0	1	copy fasta	POLD3	chr11	74587582	74648076
POLD3_chr11_74587582_74648076	0/0	t0012	2388	2	0	0	2	0	0	copy fasta	POLD3	chr11	74587582	74648076
POLD3_chr11_74587582_74648076	0/0	t0013	2388	1	0	0	1	0	0	copy fasta	POLD3	chr11	74587582	74648076
POLD3_chr11_74587582_74648076	0/0	t0014	5335	1	1	0	0	0	0	copy fasta	POLD3	chr11	74587582	74648076
POLD3_chr11_74587582_74648076	0/0	t0015	2388	1	0	0	1	0	0	copy fasta	POLD3	chr11	74587582	74648076
POLD3_chr11_74587582_74648076	0/0	t0016	2388	1	0	1	0	0	0	copy fasta	POLD3	chr11	74587582	74648076
POLD3_chr11_74587582_74648076	0/0	t0017	2388	1	1	0	0	0	0	copy fasta	POLD3	chr11	74587582	74648076
POLD3_chr11_74587582_74648076	0/0	t0018	2388	1	1	0	0	0	0	copy fasta	POLD3	chr11	74587582	74648076
POLD4_chr11_67345772_67358546	1/1	t0001	1371	150	17	27	77	4	23	copy fasta	POLD4	chr11	67345772	67358546
POLD4_chr11_67345772_67358546	0/0	t0002	1371	100	47	20	32	1	0	copy fasta	POLD4	chr11	67345772	67358546
POLD4_chr11_67345772_67358546	0/0	t0003	1371	42	14	4	24	0	0	copy fasta	POLD4	chr11	67345772	67358546
POLD4_chr11_67345772_67358546	0/0	t0004	1371	6	6	0	0	0	0	copy fasta	POLD4	chr11	67345772	67358546
POLD4_chr11_67345772_67358546	0/0	t0005	1371	5	0	0	5	0	0	copy fasta	POLD4	chr11	67345772	67358546
POLD4_chr11_67345772_67358546	0/0	t0006	1371	4	4	0	0	0	0	copy fasta	POLD4	chr11	67345772	67358546
POLD4_chr11_67345772_67358546	0/0	t0007	1371	2	0	1	0	0	1	copy fasta	POLD4	chr11	67345772	67358546
POLD4_chr11_67345772_67358546	0/0	t0008	1371	2	2	0	0	0	0	copy fasta	POLD4	chr11	67345772	67358546
POLD4_chr11_67345772_67358546	0/0	t0009	1371	2	1	0	0	1	0	copy fasta	POLD4	chr11	67345772	67358546
POLD4_chr11_67345772_67358546	0/0	t0010	1371	1	1	0	0	0	0	copy fasta	POLD4	chr11	67345772	67358546
POLDIP2_chr17_28341633_28362527	1/1	t0001	1564	226	53	56	69	10	36	copy fasta	POLDIP2	chr17	28341633	28362527
POLDIP2_chr17_28341633_28362527	0/0	t0002	1550	69	9	7	44	2	7	copy fasta	POLDIP2	chr17	28341633	28362527
POLDIP2_chr17_28341633_28362527	0/0	t0003	1564	11	11	0	0	0	0	copy fasta	POLDIP2	chr17	28341633	28362527
POLDIP2_chr17_28341633_28362527	0/0	t0004	1564	6	5	1	0	0	0	copy fasta	POLDIP2	chr17	28341633	28362527