JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
POLDIP2_chr17_28341633_28362527	0/0	t0005	1550	5	4	1	0	0	0	copy fasta	POLDIP2	chr17	28341633	28362527
POLDIP2_chr17_28341633_28362527	0/0	t0006	1564	4	0	0	4	0	0	copy fasta	POLDIP2	chr17	28341633	28362527
POLDIP2_chr17_28341633_28362527	0/0	t0007	1564	3	3	0	0	0	0	copy fasta	POLDIP2	chr17	28341633	28362527
POLDIP2_chr17_28341633_28362527	0/0	t0008	1564	2	2	0	0	0	0	copy fasta	POLDIP2	chr17	28341633	28362527
POLDIP2_chr17_28341633_28362527	0/0	t0009	1550	2	0	0	2	0	0	copy fasta	POLDIP2	chr17	28341633	28362527
POLDIP2_chr17_28341633_28362527	0/0	t0010	1564	2	1	1	0	0	0	copy fasta	POLDIP2	chr17	28341633	28362527
POLDIP2_chr17_28341633_28362527	0/0	t0011	1550	2	0	0	2	0	0	copy fasta	POLDIP2	chr17	28341633	28362527
POLDIP2_chr17_28341633_28362527	0/0	t0012	1550	2	0	2	0	0	0	copy fasta	POLDIP2	chr17	28341633	28362527
POLDIP2_chr17_28341633_28362527	0/0	t0013	1564	1	1	0	0	0	0	copy fasta	POLDIP2	chr17	28341633	28362527
POLDIP2_chr17_28341633_28362527	0/0	t0014	1550	1	1	0	0	0	0	copy fasta	POLDIP2	chr17	28341633	28362527
POLDIP2_chr17_28341633_28362527	0/0	t0015	1550	1	0	0	1	0	0	copy fasta	POLDIP2	chr17	28341633	28362527
POLDIP2_chr17_28341633_28362527	0/0	t0016	1564	1	0	0	1	0	0	copy fasta	POLDIP2	chr17	28341633	28362527
POLDIP2_chr17_28341633_28362527	0/0	t0017	1564	1	0	0	0	0	1	copy fasta	POLDIP2	chr17	28341633	28362527
POLDIP2_chr17_28341633_28362527	0/0	t0018	1564	1	0	0	1	0	0	copy fasta	POLDIP2	chr17	28341633	28362527
POLDIP3_chr22_42578721_42619883	1/1	t0001	2097	127	15	37	43	8	22	copy fasta	POLDIP3	chr22	42578721	42619883
POLDIP3_chr22_42578721_42619883	0/0	t0002	2098	82	11	4	62	0	5	copy fasta	POLDIP3	chr22	42578721	42619883
POLDIP3_chr22_42578721_42619883	0/0	t0003	2098	35	0	12	14	2	7	copy fasta	POLDIP3	chr22	42578721	42619883
POLDIP3_chr22_42578721_42619883	0/0	t0004	2098	34	19	8	0	4	3	copy fasta	POLDIP3	chr22	42578721	42619883
POLDIP3_chr22_42578721_42619883	0/0	t0005	2098	20	0	3	16	0	1	copy fasta	POLDIP3	chr22	42578721	42619883
POLDIP3_chr22_42578721_42619883	0/0	t0006	2098	16	16	0	0	0	0	copy fasta	POLDIP3	chr22	42578721	42619883
POLDIP3_chr22_42578721_42619883	0/0	t0007	2097	4	0	0	4	0	0	copy fasta	POLDIP3	chr22	42578721	42619883
POLDIP3_chr22_42578721_42619883	0/0	t0008	2098	4	4	0	0	0	0	copy fasta	POLDIP3	chr22	42578721	42619883
POLDIP3_chr22_42578721_42619883	0/0	t0009	2098	3	3	0	0	0	0	copy fasta	POLDIP3	chr22	42578721	42619883
POLDIP3_chr22_42578721_42619883	0/0	t0010	2098	2	2	0	0	0	0	copy fasta	POLDIP3	chr22	42578721	42619883
POLDIP3_chr22_42578721_42619883	0/0	t0011	2098	2	1	1	0	0	0	copy fasta	POLDIP3	chr22	42578721	42619883
POLDIP3_chr22_42578721_42619883	0/0	t0012	2098	2	2	0	0	0	0	copy fasta	POLDIP3	chr22	42578721	42619883
POLDIP3_chr22_42578721_42619883	0/0	t0013	2098	2	2	0	0	0	0	copy fasta	POLDIP3	chr22	42578721	42619883
POLDIP3_chr22_42578721_42619883	0/0	t0014	2098	2	2	0	0	0	0	copy fasta	POLDIP3	chr22	42578721	42619883
POLDIP3_chr22_42578721_42619883	0/0	t0015	2098	2	1	1	0	0	0	copy fasta	POLDIP3	chr22	42578721	42619883
POLDIP3_chr22_42578721_42619883	0/0	t0016	2098	2	2	0	0	0	0	copy fasta	POLDIP3	chr22	42578721	42619883
POLDIP3_chr22_42578721_42619883	0/0	t0017	2098	2	0	0	2	0	0	copy fasta	POLDIP3	chr22	42578721	42619883
POLDIP3_chr22_42578721_42619883	0/0	t0018	2098	2	0	0	0	0	2	copy fasta	POLDIP3	chr22	42578721	42619883
POLDIP3_chr22_42578721_42619883	0/0	t0019	2098	2	0	2	0	0	0	copy fasta	POLDIP3	chr22	42578721	42619883
POLDIP3_chr22_42578721_42619883	0/0	t0020	2098	1	0	1	0	0	0	copy fasta	POLDIP3	chr22	42578721	42619883
POLDIP3_chr22_42578721_42619883	0/0	t0021	2098	1	0	0	1	0	0	copy fasta	POLDIP3	chr22	42578721	42619883
POLDIP3_chr22_42578721_42619883	0/0	t0022	2098	1	1	0	0	0	0	copy fasta	POLDIP3	chr22	42578721	42619883
POLDIP3_chr22_42578721_42619883	0/0	t0023	2097	1	0	0	1	0	0	copy fasta	POLDIP3	chr22	42578721	42619883
POLDIP3_chr22_42578721_42619883	0/0	t0024	2098	1	1	0	0	0	0	copy fasta	POLDIP3	chr22	42578721	42619883
POLDIP3_chr22_42578721_42619883	0/0	t0025	2098	1	1	0	0	0	0	copy fasta	POLDIP3	chr22	42578721	42619883
POLDIP3_chr22_42578721_42619883	0/0	t0026	2097	1	1	0	0	0	0	copy fasta	POLDIP3	chr22	42578721	42619883
POLDIP3_chr22_42578721_42619883	0/0	t0027	2097	1	0	0	0	0	1	copy fasta	POLDIP3	chr22	42578721	42619883
POLDIP3_chr22_42578721_42619883	0/0	t0028	2097	1	0	1	0	0	0	copy fasta	POLDIP3	chr22	42578721	42619883
POLDIP3_chr22_42578721_42619883	0/0	t0029	2097	1	0	0	1	0	0	copy fasta	POLDIP3	chr22	42578721	42619883
POLDIP3_chr22_42578721_42619883	0/0	t0030	2098	1	1	0	0	0	0	copy fasta	POLDIP3	chr22	42578721	42619883
POLDIP3_chr22_42578721_42619883	0/0	t0031	2098	1	0	0	0	0	1	copy fasta	POLDIP3	chr22	42578721	42619883
POLDIP3_chr22_42578721_42619883	0/0	t0032	2098	1	0	0	0	0	1	copy fasta	POLDIP3	chr22	42578721	42619883
POLDIP3_chr22_42578721_42619883	0/0	t0033	2098	1	1	0	0	0	0	copy fasta	POLDIP3	chr22	42578721	42619883
POLDIP3_chr22_42578721_42619883	0/0	t0034	2098	1	0	0	0	0	1	copy fasta	POLDIP3	chr22	42578721	42619883
POLE2_chr14_49638555_49693214	1/1	t0001	109	180	62	38	49	12	17	copy fasta	POLE2	chr14	49638555	49693214
POLE2_chr14_49638555_49693214	0/0	t0002	109	48	31	11	3	1	2	copy fasta	POLE2	chr14	49638555	49693214