JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
POLE2_chr14_49638555_49693214	0/0	t0003	109	4	1	1	0	1	1	copy fasta	POLE2	chr14	49638555	49693214
POLE2_chr14_49638555_49693214	0/0	t0004	107	2	2	0	0	0	0	copy fasta	POLE2	chr14	49638555	49693214
POLE3_chr9_113402235_113415675	1/0	t0001	1751	241	47	48	106	8	31	copy fasta	POLE3	chr9	113402235	113415675
POLE3_chr9_113402235_113415675	0/1	t0002	1751	85	36	24	7	9	8	copy fasta	POLE3	chr9	113402235	113415675
POLE3_chr9_113402235_113415675	0/0	t0003	1750	7	0	0	3	1	3	copy fasta	POLE3	chr9	113402235	113415675
POLE3_chr9_113402235_113415675	0/0	t0004	1751	5	0	0	5	0	0	copy fasta	POLE3	chr9	113402235	113415675
POLE3_chr9_113402235_113415675	0/0	t0005	1751	2	0	0	0	0	2	copy fasta	POLE3	chr9	113402235	113415675
POLE3_chr9_113402235_113415675	0/0	t0006	1751	2	2	0	0	0	0	copy fasta	POLE3	chr9	113402235	113415675
POLE3_chr9_113402235_113415675	0/0	t0007	1750	2	2	0	0	0	0	copy fasta	POLE3	chr9	113402235	113415675
POLE3_chr9_113402235_113415675	0/0	t0008	1734	1	0	0	1	0	0	copy fasta	POLE3	chr9	113402235	113415675
POLE3_chr9_113402235_113415675	0/0	t0009	1751	1	1	0	0	0	0	copy fasta	POLE3	chr9	113402235	113415675
POLE3_chr9_113402235_113415675	0/0	t0010	1751	1	1	0	0	0	0	copy fasta	POLE3	chr9	113402235	113415675
POLE3_chr9_113402235_113415675	0/0	t0011	1751	1	0	0	0	0	1	copy fasta	POLE3	chr9	113402235	113415675
POLE3_chr9_113402235_113415675	0/0	t0012	1751	1	1	0	0	0	0	copy fasta	POLE3	chr9	113402235	113415675
POLE3_chr9_113402235_113415675	0/0	t0013	1751	1	1	0	0	0	0	copy fasta	POLE3	chr9	113402235	113415675
POLE3_chr9_113402235_113415675	0/0	t0014	1751	1	1	0	0	0	0	copy fasta	POLE3	chr9	113402235	113415675
POLE3_chr9_113402235_113415675	0/0	t0015	1751	1	0	0	1	0	0	copy fasta	POLE3	chr9	113402235	113415675
POLE3_chr9_113402235_113415675	0/0	t0016	1751	1	0	1	0	0	0	copy fasta	POLE3	chr9	113402235	113415675
POLE3_chr9_113402235_113415675	0/0	t0017	1751	1	0	0	0	0	1	copy fasta	POLE3	chr9	113402235	113415675
POLE3_chr9_113402235_113415675	0/0	t0018	1750	1	0	1	0	0	0	copy fasta	POLE3	chr9	113402235	113415675
POLE3_chr9_113402235_113415675	0/0	t0019	1750	1	0	0	1	0	0	copy fasta	POLE3	chr9	113402235	113415675
POLE4_chr2_74953643_74975128	1/0	t0001	744	332	67	42	188	9	25	copy fasta	POLE4	chr2	74953643	74975128
POLE4_chr2_74953643_74975128	0/1	t0002	744	129	17	34	52	9	16	copy fasta	POLE4	chr2	74953643	74975128
POLE4_chr2_74953643_74975128	0/0	t0003	744	10	8	2	0	0	0	copy fasta	POLE4	chr2	74953643	74975128
POLE4_chr2_74953643_74975128	0/0	t0004	744	2	0	0	0	0	2	copy fasta	POLE4	chr2	74953643	74975128
POLE4_chr2_74953643_74975128	0/0	t0005	719	1	1	0	0	0	0	copy fasta	POLE4	chr2	74953643	74975128
POLE4_chr2_74953643_74975128	0/0	t0006	744	1	0	0	0	0	1	copy fasta	POLE4	chr2	74953643	74975128
POLE4_chr2_74953643_74975128	0/0	t0007	744	1	1	0	0	0	0	copy fasta	POLE4	chr2	74953643	74975128
POLE_chr12_132618762_132692342	0/0	t0001	963	185	47	33	73	7	25	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	1/1	t0002	963	78	16	22	22	3	13	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	t0003	963	17	9	6	0	2	0	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	t0004	963	3	3	0	0	0	0	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	t0005	963	2	2	0	0	0	0	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	t0006	963	2	0	0	2	0	0	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	t0007	963	1	1	0	0	0	0	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	t0008	963	1	0	1	0	0	0	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	t0009	963	1	0	0	1	0	0	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	t0010	963	1	1	0	0	0	0	copy fasta	POLE	chr12	132618762	132692342
POLE_chr12_132618762_132692342	0/0	t0011	963	1	1	0	0	0	0	copy fasta	POLE	chr12	132618762	132692342
POLG2_chr17_64472785_64502054	1/1	t0001	125	210	16	37	114	9	32	copy fasta	POLG2	chr17	64472785	64502054
POLG2_chr17_64472785_64502054	0/0	t0002	125	113	76	17	11	3	6	copy fasta	POLG2	chr17	64472785	64502054
POLG2_chr17_64472785_64502054	0/0	t0003	125	2	0	0	2	0	0	copy fasta	POLG2	chr17	64472785	64502054
POLG2_chr17_64472785_64502054	0/0	t0004	125	1	0	0	1	0	0	copy fasta	POLG2	chr17	64472785	64502054
POLG_chr15_89311320_89339824	1/1	t0001	743	268	77	49	99	11	30	copy fasta	POLG	chr15	89311320	89339824
POLG_chr15_89311320_89339824	0/0	t0002	744	126	13	30	65	5	13	copy fasta	POLG	chr15	89311320	89339824
POLG_chr15_89311320_89339824	0/0	t0003	743	1	1	0	0	0	0	copy fasta	POLG	chr15	89311320	89339824
POLG_chr15_89311320_89339824	0/0	t0004	743	1	1	0	0	0	0	copy fasta	POLG	chr15	89311320	89339824
POLG_chr15_89311320_89339824	0/0	t0005	743	1	0	0	0	0	1	copy fasta	POLG	chr15	89311320	89339824
POLG_chr15_89311320_89339824	0/0	t0006	743	1	0	1	0	0	0	copy fasta	POLG	chr15	89311320	89339824
POLH_chr6_43571185_43625523	1/0	t0001	6227	59	12	15	20	5	6	copy fasta	POLH	chr6	43571185	43625523