JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
POLH_chr6_43571185_43625523	0/0	t0002	6227	27	0	2	21	0	4	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0003	6228	14	6	3	2	0	3	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0004	6214	12	12	0	0	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0005	6227	10	0	2	4	0	4	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0006	6228	9	0	2	6	0	1	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0007	6228	9	0	4	4	1	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0008	6228	7	2	3	0	2	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0009	6228	6	6	0	0	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0010	6227	6	6	0	0	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0011	6225	5	5	0	0	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0012	6227	4	0	1	3	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0013	6226	4	0	2	1	1	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0014	6226	3	3	0	0	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0015	6227	3	0	3	0	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0016	6229	3	0	0	3	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0017	6228	3	0	1	0	2	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0018	6228	3	3	0	0	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0019	6227	2	2	0	0	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0020	6212	2	2	0	0	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0021	6228	2	0	0	2	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0022	6229	2	1	1	0	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0023	6214	2	0	0	0	2	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0024	6228	2	0	0	2	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0025	6227	2	0	2	0	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0026	6227	2	2	0	0	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0027	6226	2	2	0	0	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0028	6225	2	2	0	0	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0029	6215	2	2	0	0	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0030	6214	2	2	0	0	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0031	6228	1	0	0	0	1	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0032	6227	1	0	0	1	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0033	6227	1	1	0	0	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0034	6228	1	0	1	0	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0035	6226	1	0	0	1	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0036	6228	1	0	1	0	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0037	6227	1	0	1	0	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0038	6228	1	0	1	0	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0039	6227	1	0	1	0	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0040	6227	1	0	0	0	0	1	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0041	6227	1	0	0	1	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0042	6228	1	0	0	0	0	1	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0043	6214	1	0	1	0	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0044	6229	1	0	0	0	0	1	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0045	6226	1	0	0	1	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0046	6229	1	0	0	1	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0047	6227	1	0	0	1	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0048	6227	1	0	1	0	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0049	6212	1	1	0	0	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0050	6227	1	0	0	0	0	1	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0051	6227	1	0	0	1	0	0	copy fasta	POLH	chr6	43571185	43625523