JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
POLH_chr6_43571185_43625523	0/0	t0052	6227	1	0	1	0	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0053	6227	1	0	0	1	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0054	6228	1	0	1	0	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/1	t0055	6227	1	0	0	0	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0056	6228	1	0	0	0	0	1	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0057	6227	1	0	0	1	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0058	6229	1	1	0	0	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0059	6228	1	0	0	0	0	1	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0060	6229	1	0	0	0	0	1	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0061	6228	1	0	0	0	0	1	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0062	6229	1	0	0	1	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0063	6228	1	0	1	0	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0064	6228	1	1	0	0	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0065	6228	1	1	0	0	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0066	6228	1	1	0	0	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0067	6225	1	1	0	0	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0068	6229	1	1	0	0	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0069	6214	1	1	0	0	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0070	6226	1	1	0	0	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0071	6225	1	1	0	0	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0072	6227	1	1	0	0	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0073	6214	1	1	0	0	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0074	6214	1	1	0	0	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0075	6228	1	0	1	0	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0076	6226	1	0	0	1	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0077	6227	1	0	0	1	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0078	6228	1	1	0	0	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0079	6229	1	1	0	0	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0080	6217	1	1	0	0	0	0	copy fasta	POLH	chr6	43571185	43625523
POLH_chr6_43571185_43625523	0/0	t0081	6228	1	1	0	0	0	0	copy fasta	POLH	chr6	43571185	43625523
POLI_chr18_54264517_54303234	0/0	t0001	3798	121	25	17	62	2	15	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	1/1	t0002	3798	62	2	19	31	2	6	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	t0003	3795	33	11	12	5	3	2	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	t0004	3796	20	20	0	0	0	0	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	t0005	3795	17	2	2	1	4	8	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	t0006	3789	16	6	4	2	3	1	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	t0007	3796	10	0	0	9	1	0	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	t0008	3798	6	0	2	2	0	2	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	t0009	3798	5	0	5	0	0	0	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	t0010	3798	5	1	4	0	0	0	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	t0011	3799	4	1	0	3	0	0	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	t0012	3796	3	1	0	0	1	1	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	t0013	3796	2	2	0	0	0	0	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	t0014	3795	2	0	0	0	0	2	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	t0015	3796	2	2	0	0	0	0	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	t0016	3797	2	0	0	1	0	1	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	t0017	3798	2	2	0	0	0	0	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	t0018	3799	2	2	0	0	0	0	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	t0019	3796	2	2	0	0	0	0	copy fasta	POLI	chr18	54264517	54303234
POLI_chr18_54264517_54303234	0/0	t0020	3798	1	0	1	0	0	0	copy fasta	POLI	chr18	54264517	54303234