Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATP1A2_chr1_160110759_160148591	0/0	t0028	2373	1	1	0	0	0	0	copy fasta	ATP1A2	chr1	160110759	160148591
ATP1A3_chr19_41961582_41999230	0/1	t0001	510	192	50	29	79	5	28	copy fasta	ATP1A3	chr19	41961582	41999230
ATP1A3_chr19_41961582_41999230	1/0	t0002	510	82	10	23	29	3	16	copy fasta	ATP1A3	chr19	41961582	41999230
ATP1A3_chr19_41961582_41999230	0/0	t0003	510	6	6	0	0	0	0	copy fasta	ATP1A3	chr19	41961582	41999230
ATP1A3_chr19_41961582_41999230	0/0	t0004	510	1	0	0	0	0	1	copy fasta	ATP1A3	chr19	41961582	41999230
ATP1A3_chr19_41961582_41999230	0/0	t0005	510	1	0	0	0	0	1	copy fasta	ATP1A3	chr19	41961582	41999230
ATP1A4_chr1_160146603_160191980	1/0	t0001	720	248	68	42	104	6	27	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/1	t0002	720	112	14	26	50	7	14	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	t0003	720	32	2	7	18	0	5	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	t0004	720	9	4	4	0	1	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	t0005	720	4	3	1	0	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	t0006	720	4	0	0	4	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	t0007	720	3	0	2	1	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	t0008	720	1	1	0	0	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	t0009	720	1	1	0	0	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	t0010	720	1	0	0	0	0	1	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	t0011	720	1	0	0	0	0	1	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	t0012	720	1	0	0	1	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1A4_chr1_160146603_160191980	0/0	t0013	720	1	1	0	0	0	0	copy fasta	ATP1A4	chr1	160146603	160191980
ATP1B1_chr1_169101690_169137719	0/1	t0001	1306	138	25	42	39	13	18	copy fasta	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	t0002	1308	100	4	5	78	0	13	copy fasta	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	t0003	1307	42	5	2	31	0	4	copy fasta	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	t0004	1306	30	1	19	4	4	2	copy fasta	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	t0005	1307	26	19	3	1	0	3	copy fasta	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	t0006	1305	9	1	3	5	0	0	copy fasta	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	t0007	1309	9	1	0	7	0	1	copy fasta	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	t0008	1307	9	9	0	0	0	0	copy fasta	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	t0009	1306	7	6	1	0	0	0	copy fasta	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	t0010	1306	6	0	0	4	0	2	copy fasta	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	t0011	1308	6	6	0	0	0	0	copy fasta	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	t0012	1305	5	5	0	0	0	0	copy fasta	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	t0013	1308	4	0	0	4	0	0	copy fasta	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	t0014	1305	4	0	1	3	0	0	copy fasta	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	1/0	t0015	1305	3	1	0	1	0	0	copy fasta	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	t0016	1306	2	0	0	2	0	0	copy fasta	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	t0017	1307	2	2	0	0	0	0	copy fasta	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	t0018	1307	1	1	0	0	0	0	copy fasta	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	t0019	1305	1	0	0	1	0	0	copy fasta	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	t0020	1306	1	0	0	0	1	0	copy fasta	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	t0021	1306	1	1	0	0	0	0	copy fasta	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	t0022	1306	1	1	0	0	0	0	copy fasta	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	t0023	1306	1	1	0	0	0	0	copy fasta	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	t0024	1307	1	1	0	0	0	0	copy fasta	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	t0025	1308	1	1	0	0	0	0	copy fasta	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	t0026	1306	1	1	0	0	0	0	copy fasta	ATP1B1	chr1	169101690	169137719
ATP1B1_chr1_169101690_169137719	0/0	t0027	1307	1	0	0	0	0	1	copy fasta	ATP1B1	chr1	169101690	169137719
ATP1B2_chr17_7645926_7662770	0/0	t0001	2471	103	6	35	53	3	6	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0002	2469	34	2	5	25	1	1	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0003	2469	21	21	0	0	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0004	2471	21	0	0	20	0	1	copy fasta	ATP1B2	chr17	7645926	7662770