JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
POLR1A_chr2_86015216_86110886	0/0	t0007	7317	9	0	0	9	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0008	7317	8	0	0	7	0	1	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0009	7317	7	4	3	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0010	7320	6	6	0	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0011	7324	6	5	0	0	0	1	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0012	7319	5	0	0	3	0	2	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0013	7318	5	3	2	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0014	7317	5	2	2	0	1	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0015	7312	5	5	0	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0016	7318	4	4	0	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0017	7318	3	3	0	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0018	7319	3	0	0	3	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0019	7318	3	0	2	0	0	1	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0020	7319	2	0	1	1	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0021	7318	2	0	0	2	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0022	7318	2	2	0	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0023	7317	2	0	0	2	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0024	7318	2	0	0	0	0	2	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0025	7318	2	0	0	2	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0026	7317	2	2	0	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0027	7319	2	0	0	1	0	1	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0028	7317	2	0	0	2	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0029	7316	2	0	0	1	0	1	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0030	7319	2	0	1	0	0	1	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0031	7317	2	2	0	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0032	7316	1	1	0	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0033	7318	1	1	0	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0034	7318	1	0	0	1	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0035	7318	1	1	0	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0036	7318	1	0	0	1	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0037	7318	1	0	0	1	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0038	7318	1	0	1	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0039	7318	1	0	0	1	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0040	7318	1	0	1	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0041	7318	1	0	0	0	1	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0042	7318	1	0	1	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0043	7318	1	0	0	1	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0044	7319	1	1	0	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0045	7325	1	0	0	0	0	1	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0046	7325	1	1	0	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0047	7325	1	0	1	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0048	7324	1	0	1	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0049	7319	1	0	0	1	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0050	7318	1	0	0	0	1	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0051	7319	1	1	0	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0052	7320	1	0	0	1	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0053	7318	1	0	1	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0054	7316	1	1	0	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0055	7319	1	0	1	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0056	7317	1	1	0	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886