JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
POLR1A_chr2_86015216_86110886	0/0	t0057	7316	1	0	1	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0058	7318	1	0	0	1	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0059	7318	1	0	0	0	0	1	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0060	7318	1	0	0	1	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0061	7318	1	0	0	1	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0062	7318	1	0	0	1	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0063	7312	1	1	0	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0064	7312	1	1	0	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0065	7319	1	1	0	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0066	7317	1	0	0	1	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0067	7317	1	0	0	0	0	1	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0068	7320	1	0	1	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0069	7318	1	0	1	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0070	7318	1	0	0	1	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0071	7317	1	0	1	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0072	7318	1	0	0	0	1	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0073	7317	1	0	0	1	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0074	7317	1	0	0	1	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0075	7317	1	0	0	0	1	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0076	7316	1	1	0	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1A_chr2_86015216_86110886	0/0	t0077	7319	1	1	0	0	0	0	copy fasta	POLR1A	chr2	86015216	86110886
POLR1B_chr2_112537465_112584818	0/1	t0001	4114	67	3	9	44	2	8	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	1/0	t0002	4120	42	8	4	29	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0003	4115	41	2	10	24	2	3	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0004	4121	26	3	6	17	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0005	4116	20	2	0	16	0	2	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0006	4103	15	12	3	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0007	4122	15	4	2	6	1	2	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0008	4123	11	1	2	6	0	2	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0009	4115	10	1	2	3	3	1	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0010	4115	8	2	2	0	1	3	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0011	4121	7	1	0	6	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0012	4119	7	0	3	4	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0013	4117	6	6	0	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0014	4115	5	4	1	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0015	4115	5	0	0	5	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0016	4117	5	0	1	3	1	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0017	4114	4	0	4	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0018	4122	4	1	0	2	0	1	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0019	4113	4	0	0	0	2	2	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0020	4117	4	4	0	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0021	4114	3	2	1	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0022	4113	3	0	1	2	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0023	4118	3	3	0	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0024	4118	3	3	0	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0025	4114	3	0	2	1	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0026	4116	2	1	1	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0027	4119	2	0	1	1	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0028	4118	2	2	0	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0029	4112	2	0	1	1	0	0	copy fasta	POLR1B	chr2	112537465	112584818