JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
POLR1B_chr2_112537465_112584818	0/0	t0030	4104	2	1	1	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0031	4112	2	0	1	0	0	1	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0032	4119	2	2	0	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0033	4121	2	2	0	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0034	4116	2	2	0	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0035	4113	2	2	0	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0036	4118	2	2	0	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0037	4117	2	0	0	2	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0038	4115	1	1	0	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0039	4117	1	0	0	1	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0040	4114	1	0	0	1	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0041	4119	1	0	0	0	0	1	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0042	4106	1	0	1	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0043	4114	1	1	0	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0044	4114	1	0	1	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0045	4104	1	1	0	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0046	4102	1	1	0	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0047	4115	1	0	0	0	0	1	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0048	4114	1	0	0	0	0	1	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0049	4120	1	0	0	1	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0050	4107	1	0	0	0	0	1	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0051	4120	1	0	0	1	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0052	4118	1	1	0	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0053	4110	1	0	0	0	0	1	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0054	4122	1	0	1	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0055	4115	1	0	1	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0056	4120	1	1	0	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0057	4113	1	0	1	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0058	4119	1	1	0	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0059	4104	1	1	0	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0060	4118	1	1	0	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0061	4120	1	0	1	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0062	4121	1	0	0	1	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0063	4120	1	1	0	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0064	4121	1	1	0	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0065	4120	1	1	0	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0066	4118	1	1	0	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0067	4114	1	1	0	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0068	4123	1	1	0	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0069	4109	1	1	0	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0070	4119	1	1	0	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0071	4116	1	1	0	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0072	4116	1	0	0	1	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0073	4116	1	0	1	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0074	4118	1	0	1	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0075	4102	1	1	0	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1B_chr2_112537465_112584818	0/0	t0076	4118	1	1	0	0	0	0	copy fasta	POLR1B	chr2	112537465	112584818
POLR1C_chr6_43512089_43526513	1/1	t0001	235	368	91	62	159	16	38	copy fasta	POLR1C	chr6	43512089	43526513
POLR1C_chr6_43512089_43526513	0/0	t0002	235	7	7	0	0	0	0	copy fasta	POLR1C	chr6	43512089	43526513
POLR1C_chr6_43512089_43526513	0/0	t0003	235	2	0	2	0	0	0	copy fasta	POLR1C	chr6	43512089	43526513