JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
POLR1C_chr6_43512089_43526513	0/0	t0004	235	2	0	0	0	0	2	copy fasta	POLR1C	chr6	43512089	43526513
POLR1C_chr6_43512089_43526513	0/0	t0005	235	1	0	0	1	0	0	copy fasta	POLR1C	chr6	43512089	43526513
POLR1D_chr13_27616892_27628449	1/1	t0001	292	223	70	28	86	7	30	copy fasta	POLR1D	chr13	27616892	27628449
POLR1D_chr13_27616892_27628449	0/0	t0002	292	154	2	34	97	5	16	copy fasta	POLR1D	chr13	27616892	27628449
POLR1D_chr13_27616892_27628449	0/0	t0003	292	54	21	6	21	2	4	copy fasta	POLR1D	chr13	27616892	27628449
POLR1D_chr13_27616892_27628449	0/0	t0004	292	3	0	0	3	0	0	copy fasta	POLR1D	chr13	27616892	27628449
POLR1D_chr13_27616892_27628449	0/0	t0005	292	2	0	0	0	2	0	copy fasta	POLR1D	chr13	27616892	27628449
POLR1D_chr13_27616892_27628449	0/0	t0006	292	1	1	0	0	0	0	copy fasta	POLR1D	chr13	27616892	27628449
POLR1D_chr13_27616892_27628449	0/0	t0007	292	1	0	0	1	0	0	copy fasta	POLR1D	chr13	27616892	27628449
POLR1E_chr9_37480948_37508697	1/0	t0001	596	213	30	44	97	9	32	copy fasta	POLR1E	chr9	37480948	37508697
POLR1E_chr9_37480948_37508697	0/1	t0002	594	88	18	18	40	3	8	copy fasta	POLR1E	chr9	37480948	37508697
POLR1E_chr9_37480948_37508697	0/0	t0003	596	57	9	6	34	0	8	copy fasta	POLR1E	chr9	37480948	37508697
POLR1E_chr9_37480948_37508697	0/0	t0004	587	26	25	1	0	0	0	copy fasta	POLR1E	chr9	37480948	37508697
POLR1E_chr9_37480948_37508697	0/0	t0005	596	8	0	0	8	0	0	copy fasta	POLR1E	chr9	37480948	37508697
POLR1E_chr9_37480948_37508697	0/0	t0006	596	3	0	2	0	0	1	copy fasta	POLR1E	chr9	37480948	37508697
POLR1E_chr9_37480948_37508697	0/0	t0007	596	3	3	0	0	0	0	copy fasta	POLR1E	chr9	37480948	37508697
POLR1E_chr9_37480948_37508697	0/0	t0008	596	3	2	1	0	0	0	copy fasta	POLR1E	chr9	37480948	37508697
POLR1E_chr9_37480948_37508697	0/0	t0009	596	2	2	0	0	0	0	copy fasta	POLR1E	chr9	37480948	37508697
POLR1E_chr9_37480948_37508697	0/0	t0010	596	2	2	0	0	0	0	copy fasta	POLR1E	chr9	37480948	37508697
POLR1E_chr9_37480948_37508697	0/0	t0011	596	1	0	0	0	0	1	copy fasta	POLR1E	chr9	37480948	37508697
POLR1E_chr9_37480948_37508697	0/0	t0012	596	1	0	0	1	0	0	copy fasta	POLR1E	chr9	37480948	37508697
POLR1E_chr9_37480948_37508697	0/0	t0013	596	1	1	0	0	0	0	copy fasta	POLR1E	chr9	37480948	37508697
POLR1F_chr7_19690461_19714037	1/0	t0001	2877	243	65	48	93	10	26	copy fasta	POLR1F	chr7	19690461	19714037
POLR1F_chr7_19690461_19714037	0/1	t0002	2874	111	2	13	78	3	14	copy fasta	POLR1F	chr7	19690461	19714037
POLR1F_chr7_19690461_19714037	0/0	t0003	2874	29	7	6	14	0	2	copy fasta	POLR1F	chr7	19690461	19714037
POLR1F_chr7_19690461_19714037	0/0	t0004	2874	10	8	2	0	0	0	copy fasta	POLR1F	chr7	19690461	19714037
POLR1F_chr7_19690461_19714037	0/0	t0005	2874	10	0	6	0	2	2	copy fasta	POLR1F	chr7	19690461	19714037
POLR1F_chr7_19690461_19714037	0/0	t0006	2877	4	0	2	0	1	1	copy fasta	POLR1F	chr7	19690461	19714037
POLR1F_chr7_19690461_19714037	0/0	t0007	2874	3	0	0	3	0	0	copy fasta	POLR1F	chr7	19690461	19714037
POLR1F_chr7_19690461_19714037	0/0	t0008	2874	2	0	0	0	0	2	copy fasta	POLR1F	chr7	19690461	19714037
POLR1F_chr7_19690461_19714037	0/0	t0009	2874	2	0	0	2	0	0	copy fasta	POLR1F	chr7	19690461	19714037
POLR1F_chr7_19690461_19714037	0/0	t0010	2874	2	1	1	0	0	0	copy fasta	POLR1F	chr7	19690461	19714037
POLR1F_chr7_19690461_19714037	0/0	t0011	2877	1	0	0	0	0	1	copy fasta	POLR1F	chr7	19690461	19714037
POLR1F_chr7_19690461_19714037	0/0	t0012	2877	1	1	0	0	0	0	copy fasta	POLR1F	chr7	19690461	19714037
POLR1F_chr7_19690461_19714037	0/0	t0013	2877	1	0	0	0	0	1	copy fasta	POLR1F	chr7	19690461	19714037
POLR1F_chr7_19690461_19714037	0/0	t0014	2874	1	0	0	0	0	1	copy fasta	POLR1F	chr7	19690461	19714037
POLR1F_chr7_19690461_19714037	0/0	t0015	2877	1	0	0	1	0	0	copy fasta	POLR1F	chr7	19690461	19714037
POLR1F_chr7_19690461_19714037	0/0	t0016	2877	1	0	0	1	0	0	copy fasta	POLR1F	chr7	19690461	19714037
POLR1F_chr7_19690461_19714037	0/0	t0017	2877	1	0	1	0	0	0	copy fasta	POLR1F	chr7	19690461	19714037
POLR1F_chr7_19690461_19714037	0/0	t0018	2877	1	0	0	1	0	0	copy fasta	POLR1F	chr7	19690461	19714037
POLR1F_chr7_19690461_19714037	0/0	t0019	2877	1	1	0	0	0	0	copy fasta	POLR1F	chr7	19690461	19714037
POLR1F_chr7_19690461_19714037	0/0	t0020	2877	1	1	0	0	0	0	copy fasta	POLR1F	chr7	19690461	19714037
POLR1F_chr7_19690461_19714037	0/0	t0021	2877	1	0	0	1	0	0	copy fasta	POLR1F	chr7	19690461	19714037
POLR1F_chr7_19690461_19714037	0/0	t0022	2877	1	0	1	0	0	0	copy fasta	POLR1F	chr7	19690461	19714037
POLR1F_chr7_19690461_19714037	0/0	t0023	2874	1	0	0	1	0	0	copy fasta	POLR1F	chr7	19690461	19714037
POLR1F_chr7_19690461_19714037	0/0	t0024	2874	1	0	0	1	0	0	copy fasta	POLR1F	chr7	19690461	19714037
POLR1G_chr19_45401644_45415737	1/1	t0001	1290	54	3	13	20	4	12	copy fasta	POLR1G	chr19	45401644	45415737
POLR1G_chr19_45401644_45415737	0/0	t0002	1290	37	1	5	20	4	7	copy fasta	POLR1G	chr19	45401644	45415737
POLR1G_chr19_45401644_45415737	0/0	t0003	1306	36	6	6	21	0	3	copy fasta	POLR1G	chr19	45401644	45415737
POLR1G_chr19_45401644_45415737	0/0	t0004	1308	28	5	3	17	0	3	copy fasta	POLR1G	chr19	45401644	45415737