Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATP1B2_chr17_7645926_7662770	0/1	t0005	2469	20	1	12	0	3	3	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0006	2469	20	0	4	9	2	5	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0007	2469	17	3	2	5	0	7	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0008	2469	15	0	2	9	2	2	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0009	2469	13	13	0	0	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	1/0	t0010	2469	13	2	0	7	0	3	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0011	2471	13	0	4	9	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0012	2471	12	0	1	11	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0013	2469	12	1	2	0	2	7	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0014	2470	7	0	0	6	0	1	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0015	2469	7	0	0	7	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0016	2471	6	4	1	1	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0017	2471	5	5	0	0	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0018	2471	5	4	1	0	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0019	2469	4	0	3	0	0	1	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0020	2469	4	0	1	2	0	1	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0021	2469	4	4	0	0	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0022	2469	3	0	0	2	0	1	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0023	2471	3	1	0	1	1	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0024	2472	3	0	0	2	0	1	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0025	2471	3	3	0	0	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0026	2469	3	2	1	0	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0027	2469	3	0	0	3	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0028	2471	3	0	0	3	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0029	2471	2	0	2	0	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0030	2471	2	0	1	0	1	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0031	2469	2	0	2	0	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0032	2469	2	0	0	2	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0033	2469	2	1	1	0	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0034	2470	2	2	0	0	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0035	2470	2	2	0	0	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0036	2469	2	1	0	0	0	1	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0037	2469	2	0	1	1	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0038	2471	2	0	2	0	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0039	2471	1	0	0	1	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0040	2469	1	1	0	0	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0041	2470	1	1	0	0	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0042	2469	1	1	0	0	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0043	2471	1	0	0	1	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0044	2470	1	0	0	1	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0045	2471	1	0	1	0	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0046	2471	1	0	1	0	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0047	2469	1	0	0	0	0	1	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0048	2471	1	0	0	1	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0049	2469	1	0	0	0	1	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0050	2469	1	0	0	0	0	1	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0051	2471	1	0	0	1	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0052	2451	1	0	0	1	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0053	2470	1	1	0	0	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0054	2471	1	1	0	0	0	0	copy fasta	ATP1B2	chr17	7645926	7662770