JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
POLR1G_chr19_45401644_45415737	0/0	t0105	1288	1	0	1	0	0	0	copy fasta	POLR1G	chr19	45401644	45415737
POLR1G_chr19_45401644_45415737	0/0	t0106	1320	1	0	0	0	0	1	copy fasta	POLR1G	chr19	45401644	45415737
POLR1G_chr19_45401644_45415737	0/0	t0107	1309	1	1	0	0	0	0	copy fasta	POLR1G	chr19	45401644	45415737
POLR1G_chr19_45401644_45415737	0/0	t0108	1311	1	0	0	0	0	1	copy fasta	POLR1G	chr19	45401644	45415737
POLR1G_chr19_45401644_45415737	0/0	t0109	1304	1	1	0	0	0	0	copy fasta	POLR1G	chr19	45401644	45415737
POLR1G_chr19_45401644_45415737	0/0	t0110	1310	1	1	0	0	0	0	copy fasta	POLR1G	chr19	45401644	45415737
POLR1G_chr19_45401644_45415737	0/0	t0111	1309	1	1	0	0	0	0	copy fasta	POLR1G	chr19	45401644	45415737
POLR1G_chr19_45401644_45415737	0/0	t0112	1317	1	0	1	0	0	0	copy fasta	POLR1G	chr19	45401644	45415737
POLR1H_chr6_30056265_30069907	0/1	t0001	471	298	54	64	136	11	32	copy fasta	POLR1H	chr6	30056265	30069907
POLR1H_chr6_30056265_30069907	0/0	t0002	471	66	33	3	25	0	5	copy fasta	POLR1H	chr6	30056265	30069907
POLR1H_chr6_30056265_30069907	0/0	t0003	471	33	2	8	20	1	2	copy fasta	POLR1H	chr6	30056265	30069907
POLR1H_chr6_30056265_30069907	0/0	t0004	472	33	5	2	20	5	1	copy fasta	POLR1H	chr6	30056265	30069907
POLR1H_chr6_30056265_30069907	0/0	t0005	471	8	0	0	8	0	0	copy fasta	POLR1H	chr6	30056265	30069907
POLR1H_chr6_30056265_30069907	0/0	t0006	471	4	0	3	0	1	0	copy fasta	POLR1H	chr6	30056265	30069907
POLR1H_chr6_30056265_30069907	0/0	t0007	471	2	0	0	2	0	0	copy fasta	POLR1H	chr6	30056265	30069907
POLR1H_chr6_30056265_30069907	0/0	t0008	471	1	0	0	1	0	0	copy fasta	POLR1H	chr6	30056265	30069907
POLR2B_chr4_56973896_57036158	1/1	t0001	261	349	82	72	146	6	41	copy fasta	POLR2B	chr4	56973896	57036158
POLR2B_chr4_56973896_57036158	0/0	t0002	261	32	11	4	14	2	1	copy fasta	POLR2B	chr4	56973896	57036158
POLR2B_chr4_56973896_57036158	0/0	t0003	261	1	1	0	0	0	0	copy fasta	POLR2B	chr4	56973896	57036158
POLR2C_chr16_57457679_57477009	0/0	t0001	943	285	77	44	130	9	25	copy fasta	POLR2C	chr16	57457679	57477009
POLR2C_chr16_57457679_57477009	0/0	t0002	931	34	0	4	21	2	7	copy fasta	POLR2C	chr16	57457679	57477009
POLR2C_chr16_57457679_57477009	0/0	t0003	949	30	1	7	18	0	4	copy fasta	POLR2C	chr16	57457679	57477009
POLR2C_chr16_57457679_57477009	1/0	t0004	937	19	4	4	4	5	1	copy fasta	POLR2C	chr16	57457679	57477009
POLR2C_chr16_57457679_57477009	0/0	t0005	955	5	3	0	2	0	0	copy fasta	POLR2C	chr16	57457679	57477009
POLR2C_chr16_57457679_57477009	0/0	t0006	942	4	4	0	0	0	0	copy fasta	POLR2C	chr16	57457679	57477009
POLR2C_chr16_57457679_57477009	0/0	t0007	950	2	0	0	0	0	2	copy fasta	POLR2C	chr16	57457679	57477009
POLR2C_chr16_57457679_57477009	0/1	t0008	949	2	0	1	0	0	0	copy fasta	POLR2C	chr16	57457679	57477009
POLR2C_chr16_57457679_57477009	0/0	t0009	943	2	0	2	0	0	0	copy fasta	POLR2C	chr16	57457679	57477009
POLR2C_chr16_57457679_57477009	0/0	t0010	943	1	0	0	1	0	0	copy fasta	POLR2C	chr16	57457679	57477009
POLR2C_chr16_57457679_57477009	0/0	t0011	943	1	1	0	0	0	0	copy fasta	POLR2C	chr16	57457679	57477009
POLR2C_chr16_57457679_57477009	0/0	t0012	937	1	0	0	0	0	1	copy fasta	POLR2C	chr16	57457679	57477009
POLR2C_chr16_57457679_57477009	0/0	t0013	937	1	0	0	1	0	0	copy fasta	POLR2C	chr16	57457679	57477009
POLR2C_chr16_57457679_57477009	0/0	t0014	919	1	0	0	1	0	0	copy fasta	POLR2C	chr16	57457679	57477009
POLR2C_chr16_57457679_57477009	0/0	t0015	951	1	0	0	1	0	0	copy fasta	POLR2C	chr16	57457679	57477009
POLR2C_chr16_57457679_57477009	0/0	t0016	949	1	0	0	1	0	0	copy fasta	POLR2C	chr16	57457679	57477009
POLR2D_chr2_127838553_127863155	1/1	t0001	4610	85	1	13	58	3	8	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0002	4617	33	0	11	14	3	5	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0003	4609	24	0	5	13	0	6	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0004	4611	23	19	2	2	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0005	4618	13	1	3	6	0	3	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0006	4612	10	9	0	0	0	1	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0007	4611	8	0	1	6	0	1	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0008	4619	7	0	2	5	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0009	4619	6	6	0	0	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0010	4610	5	0	1	2	0	2	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0011	4635	4	4	0	0	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0012	4623	4	4	0	0	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0013	4618	4	0	1	2	0	1	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0014	4600	4	1	2	0	1	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0015	4626	4	4	0	0	0	0	copy fasta	POLR2D	chr2	127838553	127863155