JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
POLR2D_chr2_127838553_127863155	0/0	t0016	4606	4	0	0	4	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0017	4608	4	0	2	0	2	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0018	4618	3	0	0	0	2	1	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0019	4609	3	0	0	3	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0020	4620	3	3	0	0	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0021	4619	3	0	1	2	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0022	4620	3	0	0	3	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0023	4627	3	0	2	1	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0024	4626	3	0	0	2	0	1	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0025	4627	3	2	1	0	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0026	4623	3	3	0	0	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0027	4617	3	0	0	0	0	3	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0028	4626	2	2	0	0	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0029	4611	2	0	1	0	0	1	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0030	4610	2	0	0	2	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0031	4627	2	2	0	0	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0032	4610	2	0	0	2	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0033	4608	2	2	0	0	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0034	4607	2	2	0	0	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0035	4638	1	1	0	0	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0036	4636	1	1	0	0	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0037	4634	1	1	0	0	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0038	4617	1	0	1	0	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0039	4622	1	1	0	0	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0040	4610	1	0	0	1	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0041	4610	1	0	1	0	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0042	4631	1	1	0	0	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0043	4628	1	1	0	0	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0044	4629	1	1	0	0	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0045	4621	1	0	0	1	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0046	4615	1	0	0	1	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0047	4616	1	0	1	0	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0048	4619	1	0	0	0	0	1	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0049	4623	1	0	0	1	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0050	4608	1	0	0	1	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0051	4608	1	1	0	0	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0052	4623	1	1	0	0	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0053	4622	1	1	0	0	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0054	4624	1	1	0	0	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0055	4620	1	1	0	0	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0056	4618	1	1	0	0	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0057	4620	1	1	0	0	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0058	4629	1	1	0	0	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0059	4631	1	0	1	0	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0060	4623	1	1	0	0	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0061	4611	1	0	0	0	0	1	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0062	4619	1	0	0	0	0	1	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0063	4616	1	0	0	0	1	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0064	4624	1	0	0	1	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0065	4620	1	0	0	0	0	1	copy fasta	POLR2D	chr2	127838553	127863155