JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
POLR2D_chr2_127838553_127863155	0/0	t0066	4621	1	0	0	0	0	1	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0067	4621	1	1	0	0	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0068	4622	1	0	0	0	0	1	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0069	4624	1	0	0	0	0	1	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0070	4619	1	0	0	1	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0071	4610	1	0	0	1	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0072	4610	1	0	0	1	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0073	4612	1	1	0	0	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0074	4612	1	0	1	0	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0075	4613	1	1	0	0	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0076	4612	1	0	0	1	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0077	4610	1	0	0	1	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0078	4628	1	0	1	0	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0079	4628	1	1	0	0	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0080	4626	1	0	1	0	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0081	4627	1	1	0	0	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0082	4625	1	0	1	0	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0083	4626	1	1	0	0	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0084	4620	1	1	0	0	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0085	4622	1	1	0	0	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0086	4620	1	1	0	0	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0087	4617	1	0	0	1	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0088	4610	1	0	0	1	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0089	4621	1	1	0	0	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0090	4618	1	1	0	0	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0091	4624	1	1	0	0	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0092	4609	1	0	0	1	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0093	4606	1	0	0	1	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0094	4612	1	0	0	1	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0095	4609	1	0	0	0	0	1	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0096	4609	1	0	0	1	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0097	4630	1	0	0	1	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0098	4608	1	0	0	1	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0099	4609	1	0	0	0	1	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0100	4608	1	1	0	0	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0101	4607	1	0	0	0	1	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0102	4619	1	0	0	0	0	1	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0103	4625	1	1	0	0	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0104	4617	1	1	0	0	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0105	4618	1	1	0	0	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2D_chr2_127838553_127863155	0/0	t0106	4619	1	1	0	0	0	0	copy fasta	POLR2D	chr2	127838553	127863155
POLR2E_chr19_1081574_1100375	0/1	t0001	2222	52	4	1	40	0	6	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0002	2220	50	4	19	13	3	11	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0003	2222	17	0	0	17	0	0	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0004	2221	17	0	0	17	0	0	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	1/0	t0005	2222	16	2	4	6	1	2	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0006	2220	15	0	8	6	0	1	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0007	2222	13	2	2	6	2	1	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0008	2220	12	1	8	0	2	1	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0009	2220	10	7	3	0	0	0	copy fasta	POLR2E	chr19	1081574	1100375