JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
POLR2E_chr19_1081574_1100375	0/0	t0010	2222	10	0	0	10	0	0	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0011	2222	9	0	5	3	0	1	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0012	2222	9	0	1	6	2	0	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0013	2222	9	0	3	3	0	3	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0014	2220	9	0	6	1	0	2	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0015	2222	7	2	3	1	1	0	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0016	2221	7	0	1	6	0	0	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0017	2222	7	0	4	2	0	1	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0018	2220	7	7	0	0	0	0	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0019	2222	6	1	1	3	0	1	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0020	2222	6	1	2	2	1	0	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0021	2220	6	2	0	1	0	3	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0022	2222	5	0	2	2	0	1	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0023	2222	5	0	0	5	0	0	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0024	2209	5	4	1	0	0	0	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0025	2223	4	0	0	3	0	1	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0026	2209	4	3	1	0	0	0	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0027	2220	4	1	1	0	2	0	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0028	2221	3	0	2	0	0	1	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0029	2220	3	0	2	0	1	0	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0030	2220	3	3	0	0	0	0	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0031	2221	3	0	0	3	0	0	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0032	2221	3	1	1	0	0	1	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0033	2220	3	3	0	0	0	0	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0034	2222	3	3	0	0	0	0	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0035	2222	3	0	0	3	0	0	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0036	2222	2	0	0	2	0	0	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0037	2221	2	2	0	0	0	0	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0038	2249	2	2	0	0	0	0	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0039	2222	2	2	0	0	0	0	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0040	2223	2	2	0	0	0	0	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0041	2223	2	1	0	1	0	0	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0042	2221	2	2	0	0	0	0	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0043	2220	2	2	0	0	0	0	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0044	2221	2	0	0	2	0	0	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0045	2221	2	2	0	0	0	0	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0046	2219	2	0	0	1	1	0	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0047	2220	2	2	0	0	0	0	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0048	2185	2	2	0	0	0	0	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0049	2220	2	1	0	0	0	1	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0050	2222	1	1	0	0	0	0	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0051	2222	1	1	0	0	0	0	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0052	2223	1	1	0	0	0	0	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0053	2222	1	0	0	0	0	1	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0054	2222	1	0	0	0	0	1	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0055	2222	1	0	0	1	0	0	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0056	2222	1	0	0	1	0	0	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0057	2223	1	0	0	1	0	0	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0058	2222	1	0	0	0	0	1	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0059	2222	1	0	0	1	0	0	copy fasta	POLR2E	chr19	1081574	1100375