JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
POLR2E_chr19_1081574_1100375	0/0	t0110	2222	1	1	0	0	0	0	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0111	2221	1	1	0	0	0	0	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0112	2220	1	1	0	0	0	0	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0113	2221	1	1	0	0	0	0	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0114	2221	1	1	0	0	0	0	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0115	2221	1	0	0	1	0	0	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0116	2222	1	1	0	0	0	0	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0117	2218	1	1	0	0	0	0	copy fasta	POLR2E	chr19	1081574	1100375
POLR2E_chr19_1081574_1100375	0/0	t0118	2191	1	0	1	0	0	0	copy fasta	POLR2E	chr19	1081574	1100375
POLR2F_chr22_37948699_37974312	0/1	t0001	1687	221	34	44	111	9	22	copy fasta	POLR2F	chr22	37948699	37974312
POLR2F_chr22_37948699_37974312	0/0	t0002	1687	82	1	22	42	4	13	copy fasta	POLR2F	chr22	37948699	37974312
POLR2F_chr22_37948699_37974312	0/0	t0003	1687	44	14	5	22	0	3	copy fasta	POLR2F	chr22	37948699	37974312
POLR2F_chr22_37948699_37974312	0/0	t0004	1687	25	24	1	0	0	0	copy fasta	POLR2F	chr22	37948699	37974312
POLR2F_chr22_37948699_37974312	0/0	t0005	1687	9	9	0	0	0	0	copy fasta	POLR2F	chr22	37948699	37974312
POLR2F_chr22_37948699_37974312	0/0	t0006	1687	6	6	0	0	0	0	copy fasta	POLR2F	chr22	37948699	37974312
POLR2F_chr22_37948699_37974312	0/0	t0007	1686	3	1	1	0	1	0	copy fasta	POLR2F	chr22	37948699	37974312
POLR2F_chr22_37948699_37974312	0/0	t0008	1687	3	0	0	3	0	0	copy fasta	POLR2F	chr22	37948699	37974312
POLR2F_chr22_37948699_37974312	0/0	t0009	1687	2	2	0	0	0	0	copy fasta	POLR2F	chr22	37948699	37974312
POLR2F_chr22_37948699_37974312	0/0	t0010	1687	1	0	0	0	0	1	copy fasta	POLR2F	chr22	37948699	37974312
POLR2F_chr22_37948699_37974312	0/0	t0011	1687	1	0	0	1	0	0	copy fasta	POLR2F	chr22	37948699	37974312
POLR2F_chr22_37948699_37974312	0/0	t0012	1687	1	0	1	0	0	0	copy fasta	POLR2F	chr22	37948699	37974312
POLR2F_chr22_37948699_37974312	0/0	t0013	1687	1	0	0	1	0	0	copy fasta	POLR2F	chr22	37948699	37974312
POLR2F_chr22_37948699_37974312	1/0	t0014	1687	1	0	0	0	0	0	copy fasta	POLR2F	chr22	37948699	37974312
POLR2F_chr22_37948699_37974312	0/0	t0015	1687	1	0	0	1	0	0	copy fasta	POLR2F	chr22	37948699	37974312
POLR2F_chr22_37948699_37974312	0/0	t0016	1687	1	1	0	0	0	0	copy fasta	POLR2F	chr22	37948699	37974312
POLR2F_chr22_37948699_37974312	0/0	t0017	1687	1	0	0	1	0	0	copy fasta	POLR2F	chr22	37948699	37974312
POLR2F_chr22_37948699_37974312	0/0	t0018	1687	1	0	0	0	0	1	copy fasta	POLR2F	chr22	37948699	37974312
POLR2G_chr11_62756580_62771710	1/1	t0001	273	354	75	65	162	12	38	copy fasta	POLR2G	chr11	62756580	62771710
POLR2G_chr11_62756580_62771710	0/0	t0002	273	13	12	1	0	0	0	copy fasta	POLR2G	chr11	62756580	62771710
POLR2G_chr11_62756580_62771710	0/0	t0003	273	1	1	0	0	0	0	copy fasta	POLR2G	chr11	62756580	62771710
POLR2H_chr3_184356710_184373591	1/1	t0001	1355	425	93	80	187	16	47	copy fasta	POLR2H	chr3	184356710	184373591
POLR2H_chr3_184356710_184373591	0/0	t0002	1355	1	1	0	0	0	0	copy fasta	POLR2H	chr3	184356710	184373591
POLR2H_chr3_184356710_184373591	0/0	t0003	1355	1	1	0	0	0	0	copy fasta	POLR2H	chr3	184356710	184373591
POLR2H_chr3_184356710_184373591	0/0	t0004	1355	1	0	0	1	0	0	copy fasta	POLR2H	chr3	184356710	184373591
POLR2H_chr3_184356710_184373591	0/0	t0005	1355	1	0	0	1	0	0	copy fasta	POLR2H	chr3	184356710	184373591
POLR2H_chr3_184356710_184373591	0/0	t0006	1355	1	0	0	1	0	0	copy fasta	POLR2H	chr3	184356710	184373591
POLR2H_chr3_184356710_184373591	0/0	t0007	1355	1	0	0	0	0	1	copy fasta	POLR2H	chr3	184356710	184373591
POLR2H_chr3_184356710_184373591	0/0	t0008	1355	1	1	0	0	0	0	copy fasta	POLR2H	chr3	184356710	184373591
POLR2I_chr19_36108709_36119875	1/1	t0001	66	437	93	78	198	18	48	copy fasta	POLR2I	chr19	36108709	36119875
POLR2I_chr19_36108709_36119875	0/0	t0002	66	1	1	0	0	0	0	copy fasta	POLR2I	chr19	36108709	36119875
POLR2J2_chr7_102661046_102676663	0/0	t0001	148	52	26	8	16	0	2	copy fasta	POLR2J2	chr7	102661046	102676663
POLR2J3_chr7_102561966_102577583	0/0	t0001	148	40	3	2	32	0	3	copy fasta	POLR2J3	chr7	102561966	102577583
POLR2J3_chr7_102561966_102577583	0/0	t0002	148	22	1	1	19	0	1	copy fasta	POLR2J3	chr7	102561966	102577583
POLR2J3_chr7_102561966_102577583	0/0	t0003	148	5	0	0	5	0	0	copy fasta	POLR2J3	chr7	102561966	102577583
POLR2J3_chr7_102561966_102577583	0/0	t0004	148	1	0	1	0	0	0	copy fasta	POLR2J3	chr7	102561966	102577583
POLR2J_chr7_102468128_102483922	0/0	t0001	584	143	21	28	65	14	15	copy fasta	POLR2J	chr7	102468128	102483922
POLR2J_chr7_102468128_102483922	0/0	t0002	614	124	8	24	80	2	10	copy fasta	POLR2J	chr7	102468128	102483922
POLR2J_chr7_102468128_102483922	0/0	t0003	614	49	0	12	21	1	15	copy fasta	POLR2J	chr7	102468128	102483922
POLR2J_chr7_102468128_102483922	1/0	t0004	584	26	19	4	0	0	2	copy fasta	POLR2J	chr7	102468128	102483922
POLR2J_chr7_102468128_102483922	0/1	t0005	584	12	5	5	0	0	1	copy fasta	POLR2J	chr7	102468128	102483922