JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
POLR2J_chr7_102468128_102483922	0/0	t0006	584	10	0	0	8	0	2	copy fasta	POLR2J	chr7	102468128	102483922
POLR2J_chr7_102468128_102483922	0/0	t0007	614	8	8	0	0	0	0	copy fasta	POLR2J	chr7	102468128	102483922
POLR2J_chr7_102468128_102483922	0/0	t0008	614	8	8	0	0	0	0	copy fasta	POLR2J	chr7	102468128	102483922
POLR2J_chr7_102468128_102483922	0/0	t0009	614	7	7	0	0	0	0	copy fasta	POLR2J	chr7	102468128	102483922
POLR2J_chr7_102468128_102483922	0/0	t0010	584	3	2	1	0	0	0	copy fasta	POLR2J	chr7	102468128	102483922
POLR2J_chr7_102468128_102483922	0/0	t0011	584	3	3	0	0	0	0	copy fasta	POLR2J	chr7	102468128	102483922
POLR2J_chr7_102468128_102483922	0/0	t0012	618	3	3	0	0	0	0	copy fasta	POLR2J	chr7	102468128	102483922
POLR2J_chr7_102468128_102483922	0/0	t0013	584	2	2	0	0	0	0	copy fasta	POLR2J	chr7	102468128	102483922
POLR2J_chr7_102468128_102483922	0/0	t0014	614	2	0	0	2	0	0	copy fasta	POLR2J	chr7	102468128	102483922
POLR2J_chr7_102468128_102483922	0/0	t0015	614	1	0	0	0	0	1	copy fasta	POLR2J	chr7	102468128	102483922
POLR2J_chr7_102468128_102483922	0/0	t0016	584	1	0	0	1	0	0	copy fasta	POLR2J	chr7	102468128	102483922
POLR2J_chr7_102468128_102483922	0/0	t0017	584	1	1	0	0	0	0	copy fasta	POLR2J	chr7	102468128	102483922
POLR2J_chr7_102468128_102483922	0/0	t0018	614	1	1	0	0	0	0	copy fasta	POLR2J	chr7	102468128	102483922
POLR2J_chr7_102468128_102483922	0/0	t0019	588	1	1	0	0	0	0	copy fasta	POLR2J	chr7	102468128	102483922
POLR2J_chr7_102468128_102483922	0/0	t0020	618	1	1	0	0	0	0	copy fasta	POLR2J	chr7	102468128	102483922
POLR2J_chr7_102468128_102483922	0/0	t0021	614	1	0	0	0	1	0	copy fasta	POLR2J	chr7	102468128	102483922
POLR2J_chr7_102468128_102483922	0/0	t0022	584	1	0	0	1	0	0	copy fasta	POLR2J	chr7	102468128	102483922
POLR2J_chr7_102468128_102483922	0/0	t0023	584	1	0	0	1	0	0	copy fasta	POLR2J	chr7	102468128	102483922
POLR2J_chr7_102468128_102483922	0/0	t0024	584	1	0	0	1	0	0	copy fasta	POLR2J	chr7	102468128	102483922
POLR2K_chr8_100145636_100159003	1/1	t0001	771	308	64	56	144	11	31	copy fasta	POLR2K	chr8	100145636	100159003
POLR2K_chr8_100145636_100159003	0/0	t0002	771	59	4	16	22	7	10	copy fasta	POLR2K	chr8	100145636	100159003
POLR2K_chr8_100145636_100159003	0/0	t0003	771	46	20	2	20	0	4	copy fasta	POLR2K	chr8	100145636	100159003
POLR2K_chr8_100145636_100159003	0/0	t0004	771	4	3	1	0	0	0	copy fasta	POLR2K	chr8	100145636	100159003
POLR2K_chr8_100145636_100159003	0/0	t0005	771	4	4	0	0	0	0	copy fasta	POLR2K	chr8	100145636	100159003
POLR2K_chr8_100145636_100159003	0/0	t0006	771	3	0	0	3	0	0	copy fasta	POLR2K	chr8	100145636	100159003
POLR2K_chr8_100145636_100159003	0/0	t0007	771	2	0	2	0	0	0	copy fasta	POLR2K	chr8	100145636	100159003
POLR2K_chr8_100145636_100159003	0/0	t0008	771	1	1	0	0	0	0	copy fasta	POLR2K	chr8	100145636	100159003
POLR2K_chr8_100145636_100159003	0/0	t0009	771	1	0	0	0	0	1	copy fasta	POLR2K	chr8	100145636	100159003
POLR2K_chr8_100145636_100159003	0/0	t0010	771	1	0	0	1	0	0	copy fasta	POLR2K	chr8	100145636	100159003
POLR2K_chr8_100145636_100159003	0/0	t0011	771	1	0	1	0	0	0	copy fasta	POLR2K	chr8	100145636	100159003
POLR2L_chr11_834721_847529	0/0	t0001	675	144	33	47	53	7	4	copy fasta	POLR2L	chr11	834721	847529
POLR2L_chr11_834721_847529	0/0	t0002	675	101	17	3	71	0	10	copy fasta	POLR2L	chr11	834721	847529
POLR2L_chr11_834721_847529	0/1	t0003	673	92	33	17	10	5	26	copy fasta	POLR2L	chr11	834721	847529
POLR2L_chr11_834721_847529	0/0	t0004	675	63	0	10	47	4	2	copy fasta	POLR2L	chr11	834721	847529
POLR2L_chr11_834721_847529	0/0	t0005	673	9	0	0	9	0	0	copy fasta	POLR2L	chr11	834721	847529
POLR2L_chr11_834721_847529	0/0	t0006	675	8	7	1	0	0	0	copy fasta	POLR2L	chr11	834721	847529
POLR2L_chr11_834721_847529	0/0	t0007	673	4	2	0	0	1	1	copy fasta	POLR2L	chr11	834721	847529
POLR2L_chr11_834721_847529	0/0	t0008	675	3	0	2	0	1	0	copy fasta	POLR2L	chr11	834721	847529
POLR2L_chr11_834721_847529	0/0	t0009	675	3	0	0	0	0	3	copy fasta	POLR2L	chr11	834721	847529
POLR2L_chr11_834721_847529	0/0	t0010	673	3	2	1	0	0	0	copy fasta	POLR2L	chr11	834721	847529
POLR2L_chr11_834721_847529	0/0	t0011	673	2	0	0	2	0	0	copy fasta	POLR2L	chr11	834721	847529
POLR2L_chr11_834721_847529	1/0	t0012	673	2	1	0	0	0	0	copy fasta	POLR2L	chr11	834721	847529
POLR2L_chr11_834721_847529	0/0	t0013	675	1	0	1	0	0	0	copy fasta	POLR2L	chr11	834721	847529
POLR2L_chr11_834721_847529	0/0	t0014	675	1	1	0	0	0	0	copy fasta	POLR2L	chr11	834721	847529
POLR2M_chr15_57701714_57722557	1/1	t0001	3008	337	51	68	176	9	31	copy fasta	POLR2M	chr15	57701714	57722557
POLR2M_chr15_57701714_57722557	0/0	t0002	3008	9	9	0	0	0	0	copy fasta	POLR2M	chr15	57701714	57722557
POLR2M_chr15_57701714_57722557	0/0	t0003	3004	7	7	0	0	0	0	copy fasta	POLR2M	chr15	57701714	57722557
POLR2M_chr15_57701714_57722557	0/0	t0004	3008	5	5	0	0	0	0	copy fasta	POLR2M	chr15	57701714	57722557
POLR2M_chr15_57701714_57722557	0/0	t0005	3009	5	4	0	1	0	0	copy fasta	POLR2M	chr15	57701714	57722557
POLR2M_chr15_57701714_57722557	0/0	t0006	3002	4	0	3	0	0	1	copy fasta	POLR2M	chr15	57701714	57722557