JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
POLR2M_chr15_57701714_57722557	0/0	t0007	3008	3	3	0	0	0	0	copy fasta	POLR2M	chr15	57701714	57722557
POLR2M_chr15_57701714_57722557	0/0	t0008	3008	2	2	0	0	0	0	copy fasta	POLR2M	chr15	57701714	57722557
POLR2M_chr15_57701714_57722557	0/0	t0009	3008	2	0	0	1	0	1	copy fasta	POLR2M	chr15	57701714	57722557
POLR2M_chr15_57701714_57722557	0/0	t0010	3008	2	2	0	0	0	0	copy fasta	POLR2M	chr15	57701714	57722557
POLR2M_chr15_57701714_57722557	0/0	t0011	3008	2	0	0	2	0	0	copy fasta	POLR2M	chr15	57701714	57722557
POLR2M_chr15_57701714_57722557	0/0	t0012	3008	2	2	0	0	0	0	copy fasta	POLR2M	chr15	57701714	57722557
POLR2M_chr15_57701714_57722557	0/0	t0013	3004	2	2	0	0	0	0	copy fasta	POLR2M	chr15	57701714	57722557
POLR2M_chr15_57701714_57722557	0/0	t0014	3008	1	1	0	0	0	0	copy fasta	POLR2M	chr15	57701714	57722557
POLR2M_chr15_57701714_57722557	0/0	t0015	3056	1	1	0	0	0	0	copy fasta	POLR2M	chr15	57701714	57722557
POLR2M_chr15_57701714_57722557	0/0	t0016	3008	1	1	0	0	0	0	copy fasta	POLR2M	chr15	57701714	57722557
POLR2M_chr15_57701714_57722557	0/0	t0017	3008	1	0	0	0	0	1	copy fasta	POLR2M	chr15	57701714	57722557
POLR2M_chr15_57701714_57722557	0/0	t0018	3008	1	0	0	0	0	1	copy fasta	POLR2M	chr15	57701714	57722557
POLR2M_chr15_57701714_57722557	0/0	t0019	3004	1	1	0	0	0	0	copy fasta	POLR2M	chr15	57701714	57722557
POLR2M_chr15_57701714_57722557	0/0	t0020	3008	1	0	0	1	0	0	copy fasta	POLR2M	chr15	57701714	57722557
POLR2M_chr15_57701714_57722557	0/0	t0021	3008	1	0	1	0	0	0	copy fasta	POLR2M	chr15	57701714	57722557
POLR2M_chr15_57701714_57722557	0/0	t0022	3008	1	0	0	1	0	0	copy fasta	POLR2M	chr15	57701714	57722557
POLR2M_chr15_57701714_57722557	0/0	t0023	3008	1	0	0	1	0	0	copy fasta	POLR2M	chr15	57701714	57722557
POLR2M_chr15_57701714_57722557	0/0	t0024	3008	1	0	0	0	0	1	copy fasta	POLR2M	chr15	57701714	57722557
POLR2M_chr15_57701714_57722557	0/0	t0025	2994	1	0	0	1	0	0	copy fasta	POLR2M	chr15	57701714	57722557
POLR2M_chr15_57701714_57722557	0/0	t0026	3008	1	1	0	0	0	0	copy fasta	POLR2M	chr15	57701714	57722557
POLR2M_chr15_57701714_57722557	0/0	t0027	3008	1	1	0	0	0	0	copy fasta	POLR2M	chr15	57701714	57722557
POLR2M_chr15_57701714_57722557	0/0	t0028	3008	1	1	0	0	0	0	copy fasta	POLR2M	chr15	57701714	57722557
POLR2M_chr15_57701714_57722557	0/0	t0029	3008	1	0	0	1	0	0	copy fasta	POLR2M	chr15	57701714	57722557
POLR2M_chr15_57701714_57722557	0/0	t0030	3008	1	1	0	0	0	0	copy fasta	POLR2M	chr15	57701714	57722557
POLR2M_chr15_57701714_57722557	0/0	t0031	3008	1	0	0	1	0	0	copy fasta	POLR2M	chr15	57701714	57722557
POLR2M_chr15_57701714_57722557	0/0	t0032	3008	1	0	0	1	0	0	copy fasta	POLR2M	chr15	57701714	57722557
POLR2M_chr15_57701714_57722557	0/0	t0033	3008	1	1	0	0	0	0	copy fasta	POLR2M	chr15	57701714	57722557
POLR2M_chr15_57701714_57722557	0/0	t0034	3008	1	0	0	0	1	0	copy fasta	POLR2M	chr15	57701714	57722557
POLR2M_chr15_57701714_57722557	0/0	t0035	3008	1	0	0	1	0	0	copy fasta	POLR2M	chr15	57701714	57722557
POLR3A_chr10_77970149_78034515	1/1	t0001	2438	170	41	36	64	4	23	copy fasta	POLR3A	chr10	77970149	78034515
POLR3A_chr10_77970149_78034515	0/0	t0002	2438	76	3	9	58	0	6	copy fasta	POLR3A	chr10	77970149	78034515
POLR3A_chr10_77970149_78034515	0/0	t0003	2438	52	0	11	33	4	4	copy fasta	POLR3A	chr10	77970149	78034515
POLR3A_chr10_77970149_78034515	0/0	t0004	2438	14	11	1	0	2	0	copy fasta	POLR3A	chr10	77970149	78034515
POLR3A_chr10_77970149_78034515	0/0	t0005	2438	10	9	1	0	0	0	copy fasta	POLR3A	chr10	77970149	78034515
POLR3A_chr10_77970149_78034515	0/0	t0006	2438	10	10	0	0	0	0	copy fasta	POLR3A	chr10	77970149	78034515
POLR3A_chr10_77970149_78034515	0/0	t0007	2438	7	0	0	7	0	0	copy fasta	POLR3A	chr10	77970149	78034515
POLR3A_chr10_77970149_78034515	0/0	t0008	2438	6	6	0	0	0	0	copy fasta	POLR3A	chr10	77970149	78034515
POLR3A_chr10_77970149_78034515	0/0	t0009	2438	3	0	0	3	0	0	copy fasta	POLR3A	chr10	77970149	78034515
POLR3A_chr10_77970149_78034515	0/0	t0010	2438	3	1	1	0	0	1	copy fasta	POLR3A	chr10	77970149	78034515
POLR3A_chr10_77970149_78034515	0/0	t0011	2438	3	0	0	3	0	0	copy fasta	POLR3A	chr10	77970149	78034515
POLR3A_chr10_77970149_78034515	0/0	t0012	2437	3	3	0	0	0	0	copy fasta	POLR3A	chr10	77970149	78034515
POLR3A_chr10_77970149_78034515	0/0	t0013	2438	2	2	0	0	0	0	copy fasta	POLR3A	chr10	77970149	78034515
POLR3A_chr10_77970149_78034515	0/0	t0014	2438	2	1	1	0	0	0	copy fasta	POLR3A	chr10	77970149	78034515
POLR3A_chr10_77970149_78034515	0/0	t0015	2438	2	2	0	0	0	0	copy fasta	POLR3A	chr10	77970149	78034515
POLR3A_chr10_77970149_78034515	0/0	t0016	2438	2	0	0	2	0	0	copy fasta	POLR3A	chr10	77970149	78034515
POLR3A_chr10_77970149_78034515	0/0	t0017	2438	1	0	0	1	0	0	copy fasta	POLR3A	chr10	77970149	78034515
POLR3A_chr10_77970149_78034515	0/0	t0018	2438	1	0	1	0	0	0	copy fasta	POLR3A	chr10	77970149	78034515
POLR3A_chr10_77970149_78034515	0/0	t0019	2438	1	0	0	1	0	0	copy fasta	POLR3A	chr10	77970149	78034515
POLR3A_chr10_77970149_78034515	0/0	t0020	2438	1	1	0	0	0	0	copy fasta	POLR3A	chr10	77970149	78034515
POLR3A_chr10_77970149_78034515	0/0	t0021	2438	1	0	0	1	0	0	copy fasta	POLR3A	chr10	77970149	78034515