JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
POLR3A_chr10_77970149_78034515	0/0	t0022	2438	1	1	0	0	0	0	copy fasta	POLR3A	chr10	77970149	78034515
POLR3A_chr10_77970149_78034515	0/0	t0023	2464	1	0	0	1	0	0	copy fasta	POLR3A	chr10	77970149	78034515
POLR3A_chr10_77970149_78034515	0/0	t0024	2438	1	1	0	0	0	0	copy fasta	POLR3A	chr10	77970149	78034515
POLR3A_chr10_77970149_78034515	0/0	t0025	2438	1	0	1	0	0	0	copy fasta	POLR3A	chr10	77970149	78034515
POLR3B_chr12_106352748_106515198	1/0	t0001	782	203	80	45	49	9	19	copy fasta	POLR3B	chr12	106352748	106515198
POLR3B_chr12_106352748_106515198	0/0	t0002	782	85	5	22	43	6	9	copy fasta	POLR3B	chr12	106352748	106515198
POLR3B_chr12_106352748_106515198	0/0	t0003	782	4	4	0	0	0	0	copy fasta	POLR3B	chr12	106352748	106515198
POLR3B_chr12_106352748_106515198	0/0	t0004	782	4	4	0	0	0	0	copy fasta	POLR3B	chr12	106352748	106515198
POLR3B_chr12_106352748_106515198	0/0	t0005	781	3	0	0	3	0	0	copy fasta	POLR3B	chr12	106352748	106515198
POLR3B_chr12_106352748_106515198	0/0	t0006	782	1	0	0	1	0	0	copy fasta	POLR3B	chr12	106352748	106515198
POLR3B_chr12_106352748_106515198	0/0	t0007	782	1	1	0	0	0	0	copy fasta	POLR3B	chr12	106352748	106515198
POLR3B_chr12_106352748_106515198	0/0	t0008	782	1	0	1	0	0	0	copy fasta	POLR3B	chr12	106352748	106515198
POLR3B_chr12_106352748_106515198	0/0	t0009	782	1	0	0	0	1	0	copy fasta	POLR3B	chr12	106352748	106515198
POLR3B_chr12_106352748_106515198	0/1	t0010	782	1	0	0	0	0	0	copy fasta	POLR3B	chr12	106352748	106515198
POLR3C_chr1_145819200_145849402	1/0	t0001	2173	237	45	29	135	6	21	copy fasta	POLR3C	chr1	145819200	145849402
POLR3C_chr1_145819200_145849402	0/0	t0002	2190	29	2	14	2	10	1	copy fasta	POLR3C	chr1	145819200	145849402
POLR3C_chr1_145819200_145849402	0/0	t0003	2194	17	3	5	3	1	5	copy fasta	POLR3C	chr1	145819200	145849402
POLR3C_chr1_145819200_145849402	0/0	t0004	2173	16	0	11	5	0	0	copy fasta	POLR3C	chr1	145819200	145849402
POLR3C_chr1_145819200_145849402	0/0	t0005	2198	13	5	0	6	1	1	copy fasta	POLR3C	chr1	145819200	145849402
POLR3C_chr1_145819200_145849402	0/0	t0006	2174	9	0	7	0	0	2	copy fasta	POLR3C	chr1	145819200	145849402
POLR3C_chr1_145819200_145849402	0/0	t0007	2215	5	5	0	0	0	0	copy fasta	POLR3C	chr1	145819200	145849402
POLR3C_chr1_145819200_145849402	0/0	t0008	2192	4	4	0	0	0	0	copy fasta	POLR3C	chr1	145819200	145849402
POLR3C_chr1_145819200_145849402	0/0	t0009	2202	4	1	0	3	0	0	copy fasta	POLR3C	chr1	145819200	145849402
POLR3C_chr1_145819200_145849402	0/0	t0010	2176	3	3	0	0	0	0	copy fasta	POLR3C	chr1	145819200	145849402
POLR3C_chr1_145819200_145849402	0/0	t0011	2211	3	3	0	0	0	0	copy fasta	POLR3C	chr1	145819200	145849402
POLR3C_chr1_145819200_145849402	0/0	t0012	2173	2	0	0	0	0	2	copy fasta	POLR3C	chr1	145819200	145849402
POLR3C_chr1_145819200_145849402	0/1	t0013	2173	2	0	1	0	0	0	copy fasta	POLR3C	chr1	145819200	145849402
POLR3C_chr1_145819200_145849402	0/0	t0014	2207	2	2	0	0	0	0	copy fasta	POLR3C	chr1	145819200	145849402
POLR3C_chr1_145819200_145849402	0/0	t0015	2173	1	0	0	0	0	1	copy fasta	POLR3C	chr1	145819200	145849402
POLR3C_chr1_145819200_145849402	0/0	t0016	2198	1	0	0	1	0	0	copy fasta	POLR3C	chr1	145819200	145849402
POLR3C_chr1_145819200_145849402	0/0	t0017	2185	1	1	0	0	0	0	copy fasta	POLR3C	chr1	145819200	145849402
POLR3C_chr1_145819200_145849402	0/0	t0018	2174	1	0	0	1	0	0	copy fasta	POLR3C	chr1	145819200	145849402
POLR3C_chr1_145819200_145849402	0/0	t0019	2173	1	0	0	1	0	0	copy fasta	POLR3C	chr1	145819200	145849402
POLR3C_chr1_145819200_145849402	0/0	t0020	2173	1	1	0	0	0	0	copy fasta	POLR3C	chr1	145819200	145849402
POLR3C_chr1_145819200_145849402	0/0	t0021	2176	1	1	0	0	0	0	copy fasta	POLR3C	chr1	145819200	145849402
POLR3C_chr1_145819200_145849402	0/0	t0022	2186	1	0	0	1	0	0	copy fasta	POLR3C	chr1	145819200	145849402
POLR3C_chr1_145819200_145849402	0/0	t0023	2193	1	0	0	1	0	0	copy fasta	POLR3C	chr1	145819200	145849402
POLR3C_chr1_145819200_145849402	0/0	t0024	2196	1	1	0	0	0	0	copy fasta	POLR3C	chr1	145819200	145849402
POLR3C_chr1_145819200_145849402	0/0	t0025	2197	1	0	0	1	0	0	copy fasta	POLR3C	chr1	145819200	145849402
POLR3C_chr1_145819200_145849402	0/0	t0026	2219	1	1	0	0	0	0	copy fasta	POLR3C	chr1	145819200	145849402
POLR3C_chr1_145819200_145849402	0/0	t0027	2215	1	0	1	0	0	0	copy fasta	POLR3C	chr1	145819200	145849402
POLR3C_chr1_145819200_145849402	0/0	t0028	2211	1	1	0	0	0	0	copy fasta	POLR3C	chr1	145819200	145849402
POLR3C_chr1_145819200_145849402	0/0	t0029	2199	1	1	0	0	0	0	copy fasta	POLR3C	chr1	145819200	145849402
POLR3C_chr1_145819200_145849402	0/0	t0030	2173	1	0	0	0	0	1	copy fasta	POLR3C	chr1	145819200	145849402
POLR3C_chr1_145819200_145849402	0/0	t0031	2219	1	1	0	0	0	0	copy fasta	POLR3C	chr1	145819200	145849402
POLR3C_chr1_145819200_145849402	0/0	t0032	2215	1	1	0	0	0	0	copy fasta	POLR3C	chr1	145819200	145849402
POLR3C_chr1_145819200_145849402	0/0	t0033	2211	1	1	0	0	0	0	copy fasta	POLR3C	chr1	145819200	145849402
POLR3C_chr1_145819200_145849402	0/0	t0034	2207	1	1	0	0	0	0	copy fasta	POLR3C	chr1	145819200	145849402
POLR3C_chr1_145819200_145849402	0/0	t0035	2199	1	1	0	0	0	0	copy fasta	POLR3C	chr1	145819200	145849402
POLR3C_chr1_145819200_145849402	0/0	t0036	2195	1	1	0	0	0	0	copy fasta	POLR3C	chr1	145819200	145849402