JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
POLR3D_chr8_22240133_22259601	0/0	t0001	4140	108	5	16	72	2	13	copy fasta	POLR3D	chr8	22240133	22259601
POLR3D_chr8_22240133_22259601	1/1	t0002	4140	98	22	24	25	11	14	copy fasta	POLR3D	chr8	22240133	22259601
POLR3D_chr8_22240133_22259601	0/0	t0003	4140	81	11	14	43	3	10	copy fasta	POLR3D	chr8	22240133	22259601
POLR3D_chr8_22240133_22259601	0/0	t0004	4140	18	18	0	0	0	0	copy fasta	POLR3D	chr8	22240133	22259601
POLR3D_chr8_22240133_22259601	0/0	t0005	4140	18	0	0	17	0	1	copy fasta	POLR3D	chr8	22240133	22259601
POLR3D_chr8_22240133_22259601	0/0	t0006	4140	15	13	2	0	0	0	copy fasta	POLR3D	chr8	22240133	22259601
POLR3D_chr8_22240133_22259601	0/0	t0007	4140	15	0	2	11	1	1	copy fasta	POLR3D	chr8	22240133	22259601
POLR3D_chr8_22240133_22259601	0/0	t0008	4140	10	0	6	4	0	0	copy fasta	POLR3D	chr8	22240133	22259601
POLR3D_chr8_22240133_22259601	0/0	t0009	4140	10	10	0	0	0	0	copy fasta	POLR3D	chr8	22240133	22259601
POLR3D_chr8_22240133_22259601	0/0	t0010	4140	9	0	1	8	0	0	copy fasta	POLR3D	chr8	22240133	22259601
POLR3D_chr8_22240133_22259601	0/0	t0011	4140	5	5	0	0	0	0	copy fasta	POLR3D	chr8	22240133	22259601
POLR3D_chr8_22240133_22259601	0/0	t0012	4136	4	3	1	0	0	0	copy fasta	POLR3D	chr8	22240133	22259601
POLR3D_chr8_22240133_22259601	0/0	t0013	4140	4	1	1	0	1	1	copy fasta	POLR3D	chr8	22240133	22259601
POLR3D_chr8_22240133_22259601	0/0	t0014	4140	4	0	0	4	0	0	copy fasta	POLR3D	chr8	22240133	22259601
POLR3D_chr8_22240133_22259601	0/0	t0015	4140	3	3	0	0	0	0	copy fasta	POLR3D	chr8	22240133	22259601
POLR3D_chr8_22240133_22259601	0/0	t0016	4140	3	0	0	0	0	3	copy fasta	POLR3D	chr8	22240133	22259601
POLR3D_chr8_22240133_22259601	0/0	t0017	4140	3	0	1	0	0	2	copy fasta	POLR3D	chr8	22240133	22259601
POLR3D_chr8_22240133_22259601	0/0	t0018	4140	2	2	0	0	0	0	copy fasta	POLR3D	chr8	22240133	22259601
POLR3D_chr8_22240133_22259601	0/0	t0019	4140	2	0	2	0	0	0	copy fasta	POLR3D	chr8	22240133	22259601
POLR3D_chr8_22240133_22259601	0/0	t0020	4140	2	2	0	0	0	0	copy fasta	POLR3D	chr8	22240133	22259601
POLR3D_chr8_22240133_22259601	0/0	t0021	4136	1	1	0	0	0	0	copy fasta	POLR3D	chr8	22240133	22259601
POLR3D_chr8_22240133_22259601	0/0	t0022	4140	1	0	0	1	0	0	copy fasta	POLR3D	chr8	22240133	22259601
POLR3D_chr8_22240133_22259601	0/0	t0023	4140	1	0	0	1	0	0	copy fasta	POLR3D	chr8	22240133	22259601
POLR3D_chr8_22240133_22259601	0/0	t0024	4140	1	0	0	0	0	1	copy fasta	POLR3D	chr8	22240133	22259601
POLR3D_chr8_22240133_22259601	0/0	t0025	4140	1	1	0	0	0	0	copy fasta	POLR3D	chr8	22240133	22259601
POLR3D_chr8_22240133_22259601	0/0	t0026	4140	1	0	0	1	0	0	copy fasta	POLR3D	chr8	22240133	22259601
POLR3D_chr8_22240133_22259601	0/0	t0027	4140	1	0	0	1	0	0	copy fasta	POLR3D	chr8	22240133	22259601
POLR3D_chr8_22240133_22259601	0/0	t0028	4140	1	1	0	0	0	0	copy fasta	POLR3D	chr8	22240133	22259601
POLR3D_chr8_22240133_22259601	0/0	t0029	4140	1	1	0	0	0	0	copy fasta	POLR3D	chr8	22240133	22259601
POLR3D_chr8_22240133_22259601	0/0	t0030	4140	1	0	0	1	0	0	copy fasta	POLR3D	chr8	22240133	22259601
POLR3D_chr8_22240133_22259601	0/0	t0031	4140	1	0	0	1	0	0	copy fasta	POLR3D	chr8	22240133	22259601
POLR3D_chr8_22240133_22259601	0/0	t0032	4140	1	1	0	0	0	0	copy fasta	POLR3D	chr8	22240133	22259601
POLR3D_chr8_22240133_22259601	0/0	t0033	4140	1	0	0	1	0	0	copy fasta	POLR3D	chr8	22240133	22259601
POLR3D_chr8_22240133_22259601	0/0	t0034	4140	1	0	1	0	0	0	copy fasta	POLR3D	chr8	22240133	22259601
POLR3D_chr8_22240133_22259601	0/0	t0035	4140	1	0	1	0	0	0	copy fasta	POLR3D	chr8	22240133	22259601
POLR3D_chr8_22240133_22259601	0/0	t0036	4140	1	0	1	0	0	0	copy fasta	POLR3D	chr8	22240133	22259601
POLR3D_chr8_22240133_22259601	0/0	t0037	4140	1	0	0	1	0	0	copy fasta	POLR3D	chr8	22240133	22259601
POLR3D_chr8_22240133_22259601	0/0	t0038	4140	1	0	1	0	0	0	copy fasta	POLR3D	chr8	22240133	22259601
POLR3E_chr16_22292409_22340096	1/0	t0001	1564	190	85	21	56	5	22	copy fasta	POLR3E	chr16	22292409	22340096
POLR3E_chr16_22292409_22340096	0/1	t0002	1564	118	3	29	59	9	17	copy fasta	POLR3E	chr16	22292409	22340096
POLR3E_chr16_22292409_22340096	0/0	t0003	1564	40	4	7	29	0	0	copy fasta	POLR3E	chr16	22292409	22340096
POLR3E_chr16_22292409_22340096	0/0	t0004	1563	4	0	3	0	0	1	copy fasta	POLR3E	chr16	22292409	22340096
POLR3E_chr16_22292409_22340096	0/0	t0005	1564	2	0	0	2	0	0	copy fasta	POLR3E	chr16	22292409	22340096
POLR3E_chr16_22292409_22340096	0/0	t0006	1564	2	0	0	0	0	2	copy fasta	POLR3E	chr16	22292409	22340096
POLR3E_chr16_22292409_22340096	0/0	t0007	1564	1	1	0	0	0	0	copy fasta	POLR3E	chr16	22292409	22340096
POLR3E_chr16_22292409_22340096	0/0	t0008	1564	1	1	0	0	0	0	copy fasta	POLR3E	chr16	22292409	22340096
POLR3F_chr20_18462390_18489646	0/0	t0001	1206	206	16	51	96	12	31	copy fasta	POLR3F	chr20	18462390	18489646
POLR3F_chr20_18462390_18489646	0/0	t0002	1206	59	10	12	33	1	3	copy fasta	POLR3F	chr20	18462390	18489646
POLR3F_chr20_18462390_18489646	0/0	t0003	1206	47	4	6	27	5	5	copy fasta	POLR3F	chr20	18462390	18489646
POLR3F_chr20_18462390_18489646	0/0	t0004	1207	41	0	6	35	0	0	copy fasta	POLR3F	chr20	18462390	18489646