Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ATP1B2_chr17_7645926_7662770	0/0	t0055	2470	1	0	0	1	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0056	2469	1	1	0	0	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0057	2469	1	1	0	0	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0058	2469	1	1	0	0	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0059	2471	1	0	0	1	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0060	2471	1	0	0	1	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0061	2471	1	0	1	0	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0062	2471	1	1	0	0	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0063	2469	1	1	0	0	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0064	2470	1	1	0	0	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0065	2469	1	1	0	0	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0066	2469	1	1	0	0	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0067	2469	1	0	0	1	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0068	2470	1	0	0	1	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0069	2471	1	0	0	1	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0070	2472	1	1	0	0	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0071	2472	1	0	0	1	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0072	2469	1	0	0	1	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0073	2471	1	0	0	1	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0074	2470	1	1	0	0	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0075	2470	1	0	0	1	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0076	2470	1	0	0	1	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0077	2472	1	0	0	1	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0078	2469	1	0	0	1	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0079	2469	1	1	0	0	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0080	2469	1	0	0	1	0	0	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B2_chr17_7645926_7662770	0/0	t0081	2469	1	0	0	0	0	1	copy fasta	ATP1B2	chr17	7645926	7662770
ATP1B3_chr3_141871643_141931549	0/1	t0001	1007	174	35	23	89	5	21	copy fasta	ATP1B3	chr3	141871643	141931549
ATP1B3_chr3_141871643_141931549	1/0	t0002	1008	72	11	13	32	7	8	copy fasta	ATP1B3	chr3	141871643	141931549
ATP1B3_chr3_141871643_141931549	0/0	t0003	1008	66	22	18	15	1	10	copy fasta	ATP1B3	chr3	141871643	141931549
ATP1B3_chr3_141871643_141931549	0/0	t0004	1007	53	0	4	43	2	4	copy fasta	ATP1B3	chr3	141871643	141931549
ATP1B3_chr3_141871643_141931549	0/0	t0005	1007	11	0	3	7	0	1	copy fasta	ATP1B3	chr3	141871643	141931549
ATP1B3_chr3_141871643_141931549	0/0	t0006	1006	11	11	0	0	0	0	copy fasta	ATP1B3	chr3	141871643	141931549
ATP1B3_chr3_141871643_141931549	0/0	t0007	1007	4	4	0	0	0	0	copy fasta	ATP1B3	chr3	141871643	141931549
ATP1B3_chr3_141871643_141931549	0/0	t0008	1005	3	3	0	0	0	0	copy fasta	ATP1B3	chr3	141871643	141931549
ATP1B3_chr3_141871643_141931549	0/0	t0009	1008	3	3	0	0	0	0	copy fasta	ATP1B3	chr3	141871643	141931549
ATP1B3_chr3_141871643_141931549	0/0	t0010	1008	2	0	0	2	0	0	copy fasta	ATP1B3	chr3	141871643	141931549
ATP1B3_chr3_141871643_141931549	0/0	t0011	1007	2	2	0	0	0	0	copy fasta	ATP1B3	chr3	141871643	141931549
ATP1B3_chr3_141871643_141931549	0/0	t0012	1007	1	0	0	1	0	0	copy fasta	ATP1B3	chr3	141871643	141931549
ATP1B3_chr3_141871643_141931549	0/0	t0013	1008	1	0	0	1	0	0	copy fasta	ATP1B3	chr3	141871643	141931549
ATP1B3_chr3_141871643_141931549	0/0	t0014	1007	1	0	0	1	0	0	copy fasta	ATP1B3	chr3	141871643	141931549
ATP1B3_chr3_141871643_141931549	0/0	t0015	1005	1	1	0	0	0	0	copy fasta	ATP1B3	chr3	141871643	141931549
ATP1B3_chr3_141871643_141931549	0/0	t0016	1008	1	0	0	0	1	0	copy fasta	ATP1B3	chr3	141871643	141931549
ATP1B3_chr3_141871643_141931549	0/0	t0017	1007	1	0	0	1	0	0	copy fasta	ATP1B3	chr3	141871643	141931549
ATP1B3_chr3_141871643_141931549	0/0	t0018	1008	1	0	1	0	0	0	copy fasta	ATP1B3	chr3	141871643	141931549
ATP1B4_chrX_120357089_120388237	1/0	t0001	3684	110	21	16	62	0	10	copy fasta	ATP1B4	chrX	120357089	120388237
ATP1B4_chrX_120357089_120388237	0/1	t0002	3684	68	3	17	26	8	13	copy fasta	ATP1B4	chrX	120357089	120388237
ATP1B4_chrX_120357089_120388237	0/0	t0003	3684	60	1	17	35	4	3	copy fasta	ATP1B4	chrX	120357089	120388237
ATP1B4_chrX_120357089_120388237	0/0	t0004	3684	28	7	1	19	0	1	copy fasta	ATP1B4	chrX	120357089	120388237
ATP1B4_chrX_120357089_120388237	0/0	t0005	3684	21	4	1	9	0	7	copy fasta	ATP1B4	chrX	120357089	120388237