JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
POLR3F_chr20_18462390_18489646	0/0	t0005	1206	28	27	1	0	0	0	copy fasta	POLR3F	chr20	18462390	18489646
POLR3F_chr20_18462390_18489646	0/0	t0006	1206	22	18	0	0	0	4	copy fasta	POLR3F	chr20	18462390	18489646
POLR3F_chr20_18462390_18489646	0/0	t0007	1206	8	1	0	7	0	0	copy fasta	POLR3F	chr20	18462390	18489646
POLR3F_chr20_18462390_18489646	0/0	t0008	1206	5	0	2	3	0	0	copy fasta	POLR3F	chr20	18462390	18489646
POLR3F_chr20_18462390_18489646	0/0	t0009	1206	4	4	0	0	0	0	copy fasta	POLR3F	chr20	18462390	18489646
POLR3F_chr20_18462390_18489646	0/0	t0010	1206	4	3	1	0	0	0	copy fasta	POLR3F	chr20	18462390	18489646
POLR3F_chr20_18462390_18489646	0/0	t0011	1206	4	3	1	0	0	0	copy fasta	POLR3F	chr20	18462390	18489646
POLR3F_chr20_18462390_18489646	0/1	t0012	1206	4	3	0	0	0	0	copy fasta	POLR3F	chr20	18462390	18489646
POLR3F_chr20_18462390_18489646	0/0	t0013	1206	4	2	2	0	0	0	copy fasta	POLR3F	chr20	18462390	18489646
POLR3F_chr20_18462390_18489646	0/0	t0014	1193	3	0	0	0	0	3	copy fasta	POLR3F	chr20	18462390	18489646
POLR3F_chr20_18462390_18489646	0/0	t0015	1206	3	3	0	0	0	0	copy fasta	POLR3F	chr20	18462390	18489646
POLR3F_chr20_18462390_18489646	0/0	t0016	1206	2	2	0	0	0	0	copy fasta	POLR3F	chr20	18462390	18489646
POLR3F_chr20_18462390_18489646	0/0	t0017	1206	1	1	0	0	0	0	copy fasta	POLR3F	chr20	18462390	18489646
POLR3F_chr20_18462390_18489646	0/0	t0018	1206	1	0	0	1	0	0	copy fasta	POLR3F	chr20	18462390	18489646
POLR3F_chr20_18462390_18489646	0/0	t0019	1206	1	1	0	0	0	0	copy fasta	POLR3F	chr20	18462390	18489646
POLR3F_chr20_18462390_18489646	0/0	t0020	1193	1	0	0	0	0	1	copy fasta	POLR3F	chr20	18462390	18489646
POLR3F_chr20_18462390_18489646	0/0	t0021	1207	1	0	0	1	0	0	copy fasta	POLR3F	chr20	18462390	18489646
POLR3F_chr20_18462390_18489646	0/0	t0022	1206	1	0	0	1	0	0	copy fasta	POLR3F	chr20	18462390	18489646
POLR3F_chr20_18462390_18489646	1/0	t0023	1206	1	0	0	0	0	0	copy fasta	POLR3F	chr20	18462390	18489646
POLR3F_chr20_18462390_18489646	0/0	t0024	1206	1	0	0	0	0	1	copy fasta	POLR3F	chr20	18462390	18489646
POLR3GL_chr1_145959690_145983848	1/1	t0001	522	367	90	78	152	8	37	copy fasta	POLR3GL	chr1	145959690	145983848
POLR3GL_chr1_145959690_145983848	0/0	t0002	522	3	0	0	3	0	0	copy fasta	POLR3GL	chr1	145959690	145983848
POLR3GL_chr1_145959690_145983848	0/0	t0003	522	1	0	0	0	0	1	copy fasta	POLR3GL	chr1	145959690	145983848
POLR3GL_chr1_145959690_145983848	0/0	t0004	522	1	0	0	1	0	0	copy fasta	POLR3GL	chr1	145959690	145983848
POLR3G_chr5_90469864_90519557	0/0	t0001	2619	73	20	16	32	1	4	copy fasta	POLR3G	chr5	90469864	90519557
POLR3G_chr5_90469864_90519557	0/1	t0002	2619	48	5	10	21	4	7	copy fasta	POLR3G	chr5	90469864	90519557
POLR3G_chr5_90469864_90519557	0/0	t0003	2615	44	2	3	32	0	7	copy fasta	POLR3G	chr5	90469864	90519557
POLR3G_chr5_90469864_90519557	0/0	t0004	2615	29	11	4	10	1	3	copy fasta	POLR3G	chr5	90469864	90519557
POLR3G_chr5_90469864_90519557	0/0	t0005	2619	25	3	4	11	3	4	copy fasta	POLR3G	chr5	90469864	90519557
POLR3G_chr5_90469864_90519557	1/0	t0006	2619	24	4	9	6	1	3	copy fasta	POLR3G	chr5	90469864	90519557
POLR3G_chr5_90469864_90519557	0/0	t0007	2619	24	1	9	12	2	0	copy fasta	POLR3G	chr5	90469864	90519557
POLR3G_chr5_90469864_90519557	0/0	t0008	2615	13	9	0	2	0	2	copy fasta	POLR3G	chr5	90469864	90519557
POLR3G_chr5_90469864_90519557	0/0	t0009	2615	13	0	2	8	2	1	copy fasta	POLR3G	chr5	90469864	90519557
POLR3G_chr5_90469864_90519557	0/0	t0010	2615	11	3	0	8	0	0	copy fasta	POLR3G	chr5	90469864	90519557
POLR3G_chr5_90469864_90519557	0/0	t0011	2619	7	1	3	0	1	2	copy fasta	POLR3G	chr5	90469864	90519557
POLR3G_chr5_90469864_90519557	0/0	t0012	2619	6	4	2	0	0	0	copy fasta	POLR3G	chr5	90469864	90519557
POLR3G_chr5_90469864_90519557	0/0	t0013	2619	5	5	0	0	0	0	copy fasta	POLR3G	chr5	90469864	90519557
POLR3G_chr5_90469864_90519557	0/0	t0014	2619	3	3	0	0	0	0	copy fasta	POLR3G	chr5	90469864	90519557
POLR3G_chr5_90469864_90519557	0/0	t0015	2619	3	0	0	3	0	0	copy fasta	POLR3G	chr5	90469864	90519557
POLR3G_chr5_90469864_90519557	0/0	t0016	2619	3	3	0	0	0	0	copy fasta	POLR3G	chr5	90469864	90519557
POLR3G_chr5_90469864_90519557	0/0	t0017	2609	3	1	1	0	1	0	copy fasta	POLR3G	chr5	90469864	90519557
POLR3G_chr5_90469864_90519557	0/0	t0018	2619	3	0	2	0	0	1	copy fasta	POLR3G	chr5	90469864	90519557
POLR3G_chr5_90469864_90519557	0/0	t0019	2619	2	2	0	0	0	0	copy fasta	POLR3G	chr5	90469864	90519557
POLR3G_chr5_90469864_90519557	0/0	t0020	2619	2	0	0	2	0	0	copy fasta	POLR3G	chr5	90469864	90519557
POLR3G_chr5_90469864_90519557	0/0	t0021	2619	2	2	0	0	0	0	copy fasta	POLR3G	chr5	90469864	90519557
POLR3G_chr5_90469864_90519557	0/0	t0022	2615	2	0	0	2	0	0	copy fasta	POLR3G	chr5	90469864	90519557
POLR3G_chr5_90469864_90519557	0/0	t0023	2619	2	2	0	0	0	0	copy fasta	POLR3G	chr5	90469864	90519557
POLR3G_chr5_90469864_90519557	0/0	t0024	2615	2	2	0	0	0	0	copy fasta	POLR3G	chr5	90469864	90519557
POLR3G_chr5_90469864_90519557	0/0	t0025	2619	2	1	1	0	0	0	copy fasta	POLR3G	chr5	90469864	90519557
POLR3G_chr5_90469864_90519557	0/0	t0026	2619	2	2	0	0	0	0	copy fasta	POLR3G	chr5	90469864	90519557