JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
POLR3G_chr5_90469864_90519557	0/0	t0027	2619	1	1	0	0	0	0	copy fasta	POLR3G	chr5	90469864	90519557
POLR3G_chr5_90469864_90519557	0/0	t0028	2615	1	0	1	0	0	0	copy fasta	POLR3G	chr5	90469864	90519557
POLR3G_chr5_90469864_90519557	0/0	t0029	2619	1	1	0	0	0	0	copy fasta	POLR3G	chr5	90469864	90519557
POLR3G_chr5_90469864_90519557	0/0	t0030	2619	1	0	0	0	0	1	copy fasta	POLR3G	chr5	90469864	90519557
POLR3G_chr5_90469864_90519557	0/0	t0031	2615	1	0	0	1	0	0	copy fasta	POLR3G	chr5	90469864	90519557
POLR3G_chr5_90469864_90519557	0/0	t0032	2619	1	0	0	0	0	1	copy fasta	POLR3G	chr5	90469864	90519557
POLR3G_chr5_90469864_90519557	0/0	t0033	2615	1	0	0	1	0	0	copy fasta	POLR3G	chr5	90469864	90519557
POLR3G_chr5_90469864_90519557	0/0	t0034	2690	1	0	1	0	0	0	copy fasta	POLR3G	chr5	90469864	90519557
POLR3G_chr5_90469864_90519557	0/0	t0035	2619	1	1	0	0	0	0	copy fasta	POLR3G	chr5	90469864	90519557
POLR3G_chr5_90469864_90519557	0/0	t0036	2619	1	1	0	0	0	0	copy fasta	POLR3G	chr5	90469864	90519557
POLR3G_chr5_90469864_90519557	0/0	t0037	2615	1	0	0	1	0	0	copy fasta	POLR3G	chr5	90469864	90519557
POLR3G_chr5_90469864_90519557	0/0	t0038	2619	1	1	0	0	0	0	copy fasta	POLR3G	chr5	90469864	90519557
POLR3G_chr5_90469864_90519557	0/0	t0039	2615	1	1	0	0	0	0	copy fasta	POLR3G	chr5	90469864	90519557
POLR3H_chr22_41520799_41549470	0/0	t0001	3868	73	20	2	50	0	1	copy fasta	POLR3H	chr22	41520799	41549470
POLR3H_chr22_41520799_41549470	1/0	t0002	3854	71	8	12	35	4	11	copy fasta	POLR3H	chr22	41520799	41549470
POLR3H_chr22_41520799_41549470	0/1	t0003	3868	66	8	11	36	5	5	copy fasta	POLR3H	chr22	41520799	41549470
POLR3H_chr22_41520799_41549470	0/0	t0004	3869	37	2	10	7	3	15	copy fasta	POLR3H	chr22	41520799	41549470
POLR3H_chr22_41520799_41549470	0/0	t0005	3864	24	0	17	7	0	0	copy fasta	POLR3H	chr22	41520799	41549470
POLR3H_chr22_41520799_41549470	0/0	t0006	3867	8	7	1	0	0	0	copy fasta	POLR3H	chr22	41520799	41549470
POLR3H_chr22_41520799_41549470	0/0	t0007	3867	7	5	2	0	0	0	copy fasta	POLR3H	chr22	41520799	41549470
POLR3H_chr22_41520799_41549470	0/0	t0008	3868	5	0	0	5	0	0	copy fasta	POLR3H	chr22	41520799	41549470
POLR3H_chr22_41520799_41549470	0/0	t0009	3868	5	5	0	0	0	0	copy fasta	POLR3H	chr22	41520799	41549470
POLR3H_chr22_41520799_41549470	0/0	t0010	3866	5	5	0	0	0	0	copy fasta	POLR3H	chr22	41520799	41549470
POLR3H_chr22_41520799_41549470	0/0	t0011	3869	4	4	0	0	0	0	copy fasta	POLR3H	chr22	41520799	41549470
POLR3H_chr22_41520799_41549470	0/0	t0012	3868	4	0	1	0	2	1	copy fasta	POLR3H	chr22	41520799	41549470
POLR3H_chr22_41520799_41549470	0/0	t0013	3868	4	0	0	4	0	0	copy fasta	POLR3H	chr22	41520799	41549470
POLR3H_chr22_41520799_41549470	0/0	t0014	3868	4	0	2	0	0	2	copy fasta	POLR3H	chr22	41520799	41549470
POLR3H_chr22_41520799_41549470	0/0	t0015	3873	4	4	0	0	0	0	copy fasta	POLR3H	chr22	41520799	41549470
POLR3H_chr22_41520799_41549470	0/0	t0016	3875	4	4	0	0	0	0	copy fasta	POLR3H	chr22	41520799	41549470
POLR3H_chr22_41520799_41549470	0/0	t0017	3875	4	4	0	0	0	0	copy fasta	POLR3H	chr22	41520799	41549470
POLR3H_chr22_41520799_41549470	0/0	t0018	3875	3	1	0	2	0	0	copy fasta	POLR3H	chr22	41520799	41549470
POLR3H_chr22_41520799_41549470	0/0	t0019	3868	3	3	0	0	0	0	copy fasta	POLR3H	chr22	41520799	41549470
POLR3H_chr22_41520799_41549470	0/0	t0020	3853	3	0	3	0	0	0	copy fasta	POLR3H	chr22	41520799	41549470
POLR3H_chr22_41520799_41549470	0/0	t0021	3842	2	0	0	2	0	0	copy fasta	POLR3H	chr22	41520799	41549470
POLR3H_chr22_41520799_41549470	0/0	t0022	3960	2	0	0	2	0	0	copy fasta	POLR3H	chr22	41520799	41549470
POLR3H_chr22_41520799_41549470	0/0	t0023	3910	2	0	0	1	0	1	copy fasta	POLR3H	chr22	41520799	41549470
POLR3H_chr22_41520799_41549470	0/0	t0024	3882	2	0	1	1	0	0	copy fasta	POLR3H	chr22	41520799	41549470
POLR3H_chr22_41520799_41549470	0/0	t0025	3875	2	1	0	1	0	0	copy fasta	POLR3H	chr22	41520799	41549470
POLR3H_chr22_41520799_41549470	0/0	t0026	3875	2	0	2	0	0	0	copy fasta	POLR3H	chr22	41520799	41549470
POLR3H_chr22_41520799_41549470	0/0	t0027	3868	2	2	0	0	0	0	copy fasta	POLR3H	chr22	41520799	41549470
POLR3H_chr22_41520799_41549470	0/0	t0028	3848	2	0	0	2	0	0	copy fasta	POLR3H	chr22	41520799	41549470
POLR3H_chr22_41520799_41549470	0/0	t0029	3868	1	1	0	0	0	0	copy fasta	POLR3H	chr22	41520799	41549470
POLR3H_chr22_41520799_41549470	0/0	t0030	3910	1	0	1	0	0	0	copy fasta	POLR3H	chr22	41520799	41549470
POLR3H_chr22_41520799_41549470	0/0	t0031	3917	1	0	1	0	0	0	copy fasta	POLR3H	chr22	41520799	41549470
POLR3H_chr22_41520799_41549470	0/0	t0032	3952	1	0	1	0	0	0	copy fasta	POLR3H	chr22	41520799	41549470
POLR3H_chr22_41520799_41549470	0/0	t0033	3959	1	0	0	1	0	0	copy fasta	POLR3H	chr22	41520799	41549470
POLR3H_chr22_41520799_41549470	0/0	t0034	3890	1	0	0	1	0	0	copy fasta	POLR3H	chr22	41520799	41549470
POLR3H_chr22_41520799_41549470	0/0	t0035	3875	1	0	1	0	0	0	copy fasta	POLR3H	chr22	41520799	41549470
POLR3H_chr22_41520799_41549470	0/0	t0036	3889	1	1	0	0	0	0	copy fasta	POLR3H	chr22	41520799	41549470
POLR3H_chr22_41520799_41549470	0/0	t0037	3868	1	0	0	0	0	1	copy fasta	POLR3H	chr22	41520799	41549470