JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
POLR3H_chr22_41520799_41549470	0/0	t0038	3868	1	0	0	1	0	0	copy fasta	POLR3H	chr22	41520799	41549470
POLR3H_chr22_41520799_41549470	0/0	t0039	3868	1	1	0	0	0	0	copy fasta	POLR3H	chr22	41520799	41549470
POLR3H_chr22_41520799_41549470	0/0	t0040	3868	1	1	0	0	0	0	copy fasta	POLR3H	chr22	41520799	41549470
POLR3H_chr22_41520799_41549470	0/0	t0041	3875	1	0	0	1	0	0	copy fasta	POLR3H	chr22	41520799	41549470
POLR3H_chr22_41520799_41549470	0/0	t0042	3869	1	1	0	0	0	0	copy fasta	POLR3H	chr22	41520799	41549470
POLR3H_chr22_41520799_41549470	0/0	t0043	3868	1	0	0	1	0	0	copy fasta	POLR3H	chr22	41520799	41549470
POLR3H_chr22_41520799_41549470	0/0	t0044	3869	1	1	0	0	0	0	copy fasta	POLR3H	chr22	41520799	41549470
POLR3H_chr22_41520799_41549470	0/0	t0045	3868	1	1	0	0	0	0	copy fasta	POLR3H	chr22	41520799	41549470
POLR3H_chr22_41520799_41549470	0/0	t0046	3868	1	0	0	1	0	0	copy fasta	POLR3H	chr22	41520799	41549470
POLR3H_chr22_41520799_41549470	0/0	t0047	3868	1	0	1	0	0	0	copy fasta	POLR3H	chr22	41520799	41549470
POLR3H_chr22_41520799_41549470	0/0	t0048	3868	1	1	0	0	0	0	copy fasta	POLR3H	chr22	41520799	41549470
POLR3H_chr22_41520799_41549470	0/0	t0049	3868	1	0	1	0	0	0	copy fasta	POLR3H	chr22	41520799	41549470
POLR3H_chr22_41520799_41549470	0/0	t0050	3868	1	0	0	1	0	0	copy fasta	POLR3H	chr22	41520799	41549470
POLR3H_chr22_41520799_41549470	0/0	t0051	3868	1	1	0	0	0	0	copy fasta	POLR3H	chr22	41520799	41549470
POLR3H_chr22_41520799_41549470	0/0	t0052	3868	1	0	0	1	0	0	copy fasta	POLR3H	chr22	41520799	41549470
POLR3H_chr22_41520799_41549470	0/0	t0053	3869	1	1	0	0	0	0	copy fasta	POLR3H	chr22	41520799	41549470
POLR3H_chr22_41520799_41549470	0/0	t0054	3864	1	0	1	0	0	0	copy fasta	POLR3H	chr22	41520799	41549470
POLR3H_chr22_41520799_41549470	0/0	t0055	3874	1	0	1	0	0	0	copy fasta	POLR3H	chr22	41520799	41549470
POLR3H_chr22_41520799_41549470	0/0	t0056	3875	1	0	0	0	0	1	copy fasta	POLR3H	chr22	41520799	41549470
POLR3H_chr22_41520799_41549470	0/0	t0057	3854	1	1	0	0	0	0	copy fasta	POLR3H	chr22	41520799	41549470
POLR3H_chr22_41520799_41549470	0/0	t0058	3848	1	0	0	1	0	0	copy fasta	POLR3H	chr22	41520799	41549470
POLR3K_chr16_41407_58608	0/0	t0001	1046	197	24	35	101	10	27	copy fasta	POLR3K	chr16	41407	58608
POLR3K_chr16_41407_58608	0/0	t0002	1049	71	1	14	45	5	6	copy fasta	POLR3K	chr16	41407	58608
POLR3K_chr16_41407_58608	0/0	t0003	1045	30	23	5	0	1	1	copy fasta	POLR3K	chr16	41407	58608
POLR3K_chr16_41407_58608	0/0	t0004	1045	29	12	3	11	0	3	copy fasta	POLR3K	chr16	41407	58608
POLR3K_chr16_41407_58608	0/0	t0005	1041	23	3	10	6	0	4	copy fasta	POLR3K	chr16	41407	58608
POLR3K_chr16_41407_58608	0/0	t0006	1049	14	3	7	0	1	3	copy fasta	POLR3K	chr16	41407	58608
POLR3K_chr16_41407_58608	0/0	t0007	1053	13	3	1	9	0	0	copy fasta	POLR3K	chr16	41407	58608
POLR3K_chr16_41407_58608	0/0	t0008	1045	12	8	3	0	0	1	copy fasta	POLR3K	chr16	41407	58608
POLR3K_chr16_41407_58608	0/0	t0009	1046	8	4	2	1	0	1	copy fasta	POLR3K	chr16	41407	58608
POLR3K_chr16_41407_58608	0/0	t0010	1049	7	7	0	0	0	0	copy fasta	POLR3K	chr16	41407	58608
POLR3K_chr16_41407_58608	0/0	t0011	1041	5	5	0	0	0	0	copy fasta	POLR3K	chr16	41407	58608
POLR3K_chr16_41407_58608	0/0	t0012	1049	4	0	0	4	0	0	copy fasta	POLR3K	chr16	41407	58608
POLR3K_chr16_41407_58608	0/0	t0013	1049	3	0	0	3	0	0	copy fasta	POLR3K	chr16	41407	58608
POLR3K_chr16_41407_58608	0/0	t0014	1046	2	0	0	2	0	0	copy fasta	POLR3K	chr16	41407	58608
POLR3K_chr16_41407_58608	0/0	t0015	1037	2	0	0	2	0	0	copy fasta	POLR3K	chr16	41407	58608
POLR3K_chr16_41407_58608	0/0	t0016	1045	1	1	0	0	0	0	copy fasta	POLR3K	chr16	41407	58608
POLR3K_chr16_41407_58608	0/0	t0017	1049	1	1	0	0	0	0	copy fasta	POLR3K	chr16	41407	58608
POLR3K_chr16_41407_58608	0/0	t0018	1049	1	1	0	0	0	0	copy fasta	POLR3K	chr16	41407	58608
POLR3K_chr16_41407_58608	0/0	t0019	1053	1	0	0	0	1	0	copy fasta	POLR3K	chr16	41407	58608
POLR3K_chr16_41407_58608	0/0	t0020	1045	1	1	0	0	0	0	copy fasta	POLR3K	chr16	41407	58608
POLR3K_chr16_41407_58608	0/0	t0021	1045	1	0	0	1	0	0	copy fasta	POLR3K	chr16	41407	58608
POLR3K_chr16_41407_58608	0/0	t0022	1057	1	0	0	1	0	0	copy fasta	POLR3K	chr16	41407	58608
POLR3K_chr16_41407_58608	0/0	t0023	1037	1	1	0	0	0	0	copy fasta	POLR3K	chr16	41407	58608
POLR3K_chr16_41407_58608	0/0	t0024	1046	1	0	0	1	0	0	copy fasta	POLR3K	chr16	41407	58608
POLR3K_chr16_41407_58608	0/0	t0025	1046	1	0	0	1	0	0	copy fasta	POLR3K	chr16	41407	58608
POLR3K_chr16_41407_58608	0/0	t0026	1045	1	0	0	1	0	0	copy fasta	POLR3K	chr16	41407	58608
POLR3K_chr16_41407_58608	0/0	t0027	1046	1	0	0	1	0	0	copy fasta	POLR3K	chr16	41407	58608
POLRMT_chr19_612221_638537	1/1	t0001	79	145	12	42	68	11	10	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	t0002	99	114	51	16	19	7	21	copy fasta	POLRMT	chr19	612221	638537