JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
POLRMT_chr19_612221_638537	0/0	t0003	102	68	17	5	35	0	11	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	t0004	93	63	8	10	39	0	6	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	t0005	102	16	0	0	16	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	t0006	105	4	4	0	0	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	t0007	102	4	4	0	0	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	t0008	108	3	2	0	1	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	t0009	93	2	0	0	2	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	t0010	99	2	2	0	0	0	0	copy fasta	POLRMT	chr19	612221	638537
POLRMT_chr19_612221_638537	0/0	t0011	79	1	0	1	0	0	0	copy fasta	POLRMT	chr19	612221	638537
POM121C_chr7_75411786_75491299	0/1	t0001	2908	117	6	27	62	6	15	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	t0002	2904	35	22	5	0	2	6	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	1/0	t0003	2904	26	3	7	8	0	7	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	t0004	2902	22	17	5	0	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	t0005	2904	17	3	7	1	4	2	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	t0006	2904	11	0	5	2	1	3	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	t0007	2908	8	0	0	8	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	t0008	2904	8	7	0	0	0	1	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	t0009	2904	5	5	0	0	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	t0010	2904	4	0	2	0	2	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	t0011	2904	4	4	0	0	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	t0012	2904	4	1	3	0	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	t0013	2908	4	0	4	0	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	t0014	2908	3	0	1	2	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	t0015	2908	3	3	0	0	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	t0016	2904	3	3	0	0	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	t0017	2904	3	3	0	0	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	t0018	2904	3	2	0	1	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	t0019	2902	2	2	0	0	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	t0020	2904	2	2	0	0	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	t0021	2904	2	1	0	1	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	t0022	2906	2	1	1	0	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	t0023	2904	1	0	0	0	0	1	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	t0024	2902	1	1	0	0	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	t0025	2904	1	0	1	0	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	t0026	2904	1	1	0	0	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	t0027	2908	1	1	0	0	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	t0028	2908	1	0	0	1	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	t0029	2904	1	0	0	0	0	1	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	t0030	2904	1	1	0	0	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	t0031	2904	1	0	1	0	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	t0032	2904	1	1	0	0	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	t0033	2908	1	0	0	1	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	t0034	2904	1	0	0	0	1	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	t0035	2902	1	1	0	0	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	t0036	2908	1	1	0	0	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	t0037	2908	1	0	0	1	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	t0038	2908	1	0	0	1	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	t0039	2904	1	0	0	1	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	t0040	2904	1	0	1	0	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121C_chr7_75411786_75491299	0/0	t0041	2904	1	1	0	0	0	0	copy fasta	POM121C	chr7	75411786	75491299