JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
POM121C_chr7_75411786_75491299	0/0	t0042	2904	1	1	0	0	0	0	copy fasta	POM121C	chr7	75411786	75491299
POM121L12_chr7_53030633_53041925	1/1	t0001	403	408	83	72	189	16	46	copy fasta	POM121L12	chr7	53030633	53041925
POM121L12_chr7_53030633_53041925	0/0	t0002	403	5	0	3	2	0	0	copy fasta	POM121L12	chr7	53030633	53041925
POM121L12_chr7_53030633_53041925	0/0	t0003	403	5	0	0	3	0	2	copy fasta	POM121L12	chr7	53030633	53041925
POM121L12_chr7_53030633_53041925	0/0	t0004	403	4	4	0	0	0	0	copy fasta	POM121L12	chr7	53030633	53041925
POM121L12_chr7_53030633_53041925	0/0	t0005	403	4	3	1	0	0	0	copy fasta	POM121L12	chr7	53030633	53041925
POM121L12_chr7_53030633_53041925	0/0	t0006	403	4	4	0	0	0	0	copy fasta	POM121L12	chr7	53030633	53041925
POM121L12_chr7_53030633_53041925	0/0	t0007	403	1	1	0	0	0	0	copy fasta	POM121L12	chr7	53030633	53041925
POM121L12_chr7_53030633_53041925	0/0	t0008	403	1	1	0	0	0	0	copy fasta	POM121L12	chr7	53030633	53041925
POM121L2_chr6_27303377_27317273	0/0	t0001	790	210	5	36	137	10	22	copy fasta	POM121L2	chr6	27303377	27317273
POM121L2_chr6_27303377_27317273	0/1	t0002	789	95	40	21	13	6	14	copy fasta	POM121L2	chr6	27303377	27317273
POM121L2_chr6_27303377_27317273	0/0	t0003	789	87	33	10	43	0	1	copy fasta	POM121L2	chr6	27303377	27317273
POM121L2_chr6_27303377_27317273	0/0	t0004	790	16	12	2	0	0	2	copy fasta	POM121L2	chr6	27303377	27317273
POM121L2_chr6_27303377_27317273	0/0	t0005	789	11	0	2	9	0	0	copy fasta	POM121L2	chr6	27303377	27317273
POM121L2_chr6_27303377_27317273	0/0	t0006	789	4	3	1	0	0	0	copy fasta	POM121L2	chr6	27303377	27317273
POM121L2_chr6_27303377_27317273	0/0	t0007	790	2	2	0	0	0	0	copy fasta	POM121L2	chr6	27303377	27317273
POM121L2_chr6_27303377_27317273	0/0	t0008	789	1	1	0	0	0	0	copy fasta	POM121L2	chr6	27303377	27317273
POM121L2_chr6_27303377_27317273	1/0	t0009	790	1	0	0	0	0	0	copy fasta	POM121L2	chr6	27303377	27317273
POM121L2_chr6_27303377_27317273	0/0	t0010	790	1	0	0	0	0	1	copy fasta	POM121L2	chr6	27303377	27317273
POM121_chr7_72920095_72953299	1/0	t0001	2093	145	12	25	86	4	17	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	t0002	2093	134	10	33	68	8	15	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	t0003	2093	17	0	0	16	1	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	t0004	2093	14	1	7	0	1	5	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	t0005	2093	11	7	0	2	0	2	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	t0006	2090	9	8	1	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	t0007	2093	6	6	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	t0008	2093	6	0	4	1	0	1	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	t0009	2093	6	6	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	t0010	2093	4	4	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	t0011	2093	4	3	1	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	t0012	2093	4	3	1	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	t0013	2093	4	0	0	4	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	t0014	2094	3	0	3	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	t0015	2093	3	0	0	0	3	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	t0016	2093	3	3	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	t0017	2093	3	3	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	t0018	2093	3	0	0	3	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	t0019	2093	2	0	2	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	t0020	2093	2	2	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	t0021	2093	2	0	0	1	0	1	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	t0022	2093	2	2	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	t0023	2041	2	1	1	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/1	t0024	2093	2	0	0	1	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	t0025	2094	2	2	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	t0026	2093	1	1	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	t0027	2093	1	0	0	1	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	t0028	2090	1	1	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	t0029	2093	1	0	1	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	t0030	2093	1	1	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	t0031	2093	1	0	0	1	0	0	copy fasta	POM121	chr7	72920095	72953299