JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
POM121_chr7_72920095_72953299	0/0	t0032	2093	1	0	0	1	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	t0033	2093	1	0	0	1	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	t0034	2093	1	1	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	t0035	2094	1	1	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	t0036	2093	1	0	0	0	0	1	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	t0037	2093	1	1	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	t0038	2093	1	1	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	t0039	2093	1	1	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	t0040	2090	1	1	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	t0041	2093	1	1	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	t0042	2093	1	0	0	1	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	t0043	2093	1	0	0	1	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	t0044	2093	1	0	1	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	t0045	2093	1	0	0	0	1	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	t0046	2094	1	1	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	t0047	2094	1	1	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	t0048	2094	1	1	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	t0049	2094	1	0	1	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	t0050	2093	1	1	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	t0051	2041	1	1	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	t0052	2093	1	0	0	1	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	t0053	2093	1	1	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	t0054	2094	1	0	1	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	t0055	2093	1	0	0	1	0	0	copy fasta	POM121	chr7	72920095	72953299
POM121_chr7_72920095_72953299	0/0	t0056	2093	1	1	0	0	0	0	copy fasta	POM121	chr7	72920095	72953299
POMC_chr2_25155860_25173580	1/1	t0001	325	381	77	61	189	10	42	copy fasta	POMC	chr2	25155860	25173580
POMC_chr2_25155860_25173580	0/0	t0002	325	37	10	17	2	6	2	copy fasta	POMC	chr2	25155860	25173580
POMC_chr2_25155860_25173580	0/0	t0003	325	1	1	0	0	0	0	copy fasta	POMC	chr2	25155860	25173580
POMC_chr2_25155860_25173580	0/0	t0004	325	1	0	0	1	0	0	copy fasta	POMC	chr2	25155860	25173580
POMGNT1_chr1_46183683_46203434	1/1	t0001	737	399	91	66	181	14	45	copy fasta	POMGNT1	chr1	46183683	46203434
POMGNT1_chr1_46183683_46203434	0/0	t0002	737	4	1	0	2	0	1	copy fasta	POMGNT1	chr1	46183683	46203434
POMGNT1_chr1_46183683_46203434	0/0	t0003	737	2	2	0	0	0	0	copy fasta	POMGNT1	chr1	46183683	46203434
POMGNT1_chr1_46183683_46203434	0/0	t0004	737	1	0	0	1	0	0	copy fasta	POMGNT1	chr1	46183683	46203434
POMGNT2_chr3_43074234_43111079	0/1	t0001	805	178	45	25	77	6	24	copy fasta	POMGNT2	chr3	43074234	43111079
POMGNT2_chr3_43074234_43111079	0/0	t0002	805	153	21	34	84	2	12	copy fasta	POMGNT2	chr3	43074234	43111079
POMGNT2_chr3_43074234_43111079	0/0	t0003	805	15	4	7	0	2	2	copy fasta	POMGNT2	chr3	43074234	43111079
POMGNT2_chr3_43074234_43111079	1/0	t0004	805	12	9	2	0	0	0	copy fasta	POMGNT2	chr3	43074234	43111079
POMGNT2_chr3_43074234_43111079	0/0	t0005	805	11	8	3	0	0	0	copy fasta	POMGNT2	chr3	43074234	43111079
POMGNT2_chr3_43074234_43111079	0/0	t0006	805	4	4	0	0	0	0	copy fasta	POMGNT2	chr3	43074234	43111079
POMGNT2_chr3_43074234_43111079	0/0	t0007	805	3	2	1	0	0	0	copy fasta	POMGNT2	chr3	43074234	43111079
POMGNT2_chr3_43074234_43111079	0/0	t0008	805	1	1	0	0	0	0	copy fasta	POMGNT2	chr3	43074234	43111079
POMGNT2_chr3_43074234_43111079	0/0	t0009	805	1	0	0	1	0	0	copy fasta	POMGNT2	chr3	43074234	43111079
POMK_chr8_43088515_43128434	1/1	t0001	816	226	42	46	100	6	30	copy fasta	POMK	chr8	43088515	43128434
POMK_chr8_43088515_43128434	0/0	t0002	816	19	13	3	0	0	3	copy fasta	POMK	chr8	43088515	43128434
POMK_chr8_43088515_43128434	0/0	t0003	815	13	12	1	0	0	0	copy fasta	POMK	chr8	43088515	43128434
POMK_chr8_43088515_43128434	0/0	t0004	816	9	9	0	0	0	0	copy fasta	POMK	chr8	43088515	43128434
POMK_chr8_43088515_43128434	0/0	t0005	815	3	3	0	0	0	0	copy fasta	POMK	chr8	43088515	43128434
POMK_chr8_43088515_43128434	0/0	t0006	816	1	0	0	1	0	0	copy fasta	POMK	chr8	43088515	43128434
POMK_chr8_43088515_43128434	0/0	t0007	815	1	0	0	0	0	1	copy fasta	POMK	chr8	43088515	43128434
POMK_chr8_43088515_43128434	0/0	t0008	816	1	1	0	0	0	0	copy fasta	POMK	chr8	43088515	43128434