JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
POMK_chr8_43088515_43128434	0/0	t0009	816	1	1	0	0	0	0	copy fasta	POMK	chr8	43088515	43128434
POMK_chr8_43088515_43128434	0/0	t0010	816	1	0	0	1	0	0	copy fasta	POMK	chr8	43088515	43128434
POMK_chr8_43088515_43128434	0/0	t0011	816	1	1	0	0	0	0	copy fasta	POMK	chr8	43088515	43128434
POMP_chr13_28654130_28683959	1/1	t0001	913	383	54	77	192	14	44	copy fasta	POMP	chr13	28654130	28683959
POMP_chr13_28654130_28683959	0/0	t0002	913	15	14	1	0	0	0	copy fasta	POMP	chr13	28654130	28683959
POMP_chr13_28654130_28683959	0/0	t0003	913	14	12	2	0	0	0	copy fasta	POMP	chr13	28654130	28683959
POMP_chr13_28654130_28683959	0/0	t0004	913	11	10	1	0	0	0	copy fasta	POMP	chr13	28654130	28683959
POMP_chr13_28654130_28683959	0/0	t0005	913	4	4	0	0	0	0	copy fasta	POMP	chr13	28654130	28683959
POMP_chr13_28654130_28683959	0/0	t0006	913	3	3	0	0	0	0	copy fasta	POMP	chr13	28654130	28683959
POMP_chr13_28654130_28683959	0/0	t0007	913	1	0	1	0	0	0	copy fasta	POMP	chr13	28654130	28683959
POMP_chr13_28654130_28683959	0/0	t0008	913	1	1	0	0	0	0	copy fasta	POMP	chr13	28654130	28683959
POMT1_chr9_131497918_131528799	0/1	t0001	880	224	36	49	96	9	33	copy fasta	POMT1	chr9	131497918	131528799
POMT1_chr9_131497918_131528799	0/0	t0002	880	41	11	4	21	3	2	copy fasta	POMT1	chr9	131497918	131528799
POMT1_chr9_131497918_131528799	0/0	t0003	880	26	21	4	0	0	1	copy fasta	POMT1	chr9	131497918	131528799
POMT1_chr9_131497918_131528799	0/0	t0004	880	19	2	9	0	6	2	copy fasta	POMT1	chr9	131497918	131528799
POMT1_chr9_131497918_131528799	1/0	t0005	880	6	4	1	0	0	0	copy fasta	POMT1	chr9	131497918	131528799
POMT1_chr9_131497918_131528799	0/0	t0006	880	5	5	0	0	0	0	copy fasta	POMT1	chr9	131497918	131528799
POMT1_chr9_131497918_131528799	0/0	t0007	880	5	5	0	0	0	0	copy fasta	POMT1	chr9	131497918	131528799
POMT1_chr9_131497918_131528799	0/0	t0008	880	1	1	0	0	0	0	copy fasta	POMT1	chr9	131497918	131528799
POMT1_chr9_131497918_131528799	0/0	t0009	880	1	0	0	1	0	0	copy fasta	POMT1	chr9	131497918	131528799
POMT1_chr9_131497918_131528799	0/0	t0010	880	1	0	1	0	0	0	copy fasta	POMT1	chr9	131497918	131528799
POMT1_chr9_131497918_131528799	0/0	t0011	880	1	1	0	0	0	0	copy fasta	POMT1	chr9	131497918	131528799
POMT1_chr9_131497918_131528799	0/0	t0012	880	1	0	0	1	0	0	copy fasta	POMT1	chr9	131497918	131528799
POMT1_chr9_131497918_131528799	0/0	t0013	880	1	1	0	0	0	0	copy fasta	POMT1	chr9	131497918	131528799
POMT1_chr9_131497918_131528799	0/0	t0014	880	1	1	0	0	0	0	copy fasta	POMT1	chr9	131497918	131528799
POMT1_chr9_131497918_131528799	0/0	t0015	880	1	0	0	1	0	0	copy fasta	POMT1	chr9	131497918	131528799
POMT2_chr14_77269956_77325883	0/0	t0001	2623	122	11	22	74	0	15	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	t0002	2623	79	6	15	52	4	2	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	1/0	t0003	2623	49	10	18	4	6	10	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	t0004	2623	32	4	4	10	4	10	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	t0005	2623	15	11	0	0	0	4	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	t0006	2624	13	1	4	7	1	0	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	t0007	2623	10	1	0	9	0	0	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	t0008	2623	8	7	1	0	0	0	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	t0009	2623	7	7	0	0	0	0	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	t0010	2623	7	7	0	0	0	0	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	t0011	2623	5	5	0	0	0	0	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	t0012	2623	4	3	1	0	0	0	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	t0013	2623	4	0	0	4	0	0	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	t0014	2623	4	4	0	0	0	0	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	t0015	2623	3	0	0	3	0	0	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	t0016	2623	3	0	0	3	0	0	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	t0017	2623	2	0	0	2	0	0	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	t0018	2623	2	0	0	2	0	0	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	t0019	2623	2	1	1	0	0	0	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	t0020	2623	2	2	0	0	0	0	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	t0021	2623	2	2	0	0	0	0	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	t0022	2623	1	1	0	0	0	0	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	t0023	2623	1	1	0	0	0	0	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	t0024	2623	1	0	0	1	0	0	copy fasta	POMT2	chr14	77269956	77325883