JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
POMT2_chr14_77269956_77325883	0/0	t0025	2623	1	1	0	0	0	0	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	t0026	2623	1	0	0	1	0	0	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	t0027	2623	1	0	0	1	0	0	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	t0028	2623	1	0	0	0	0	1	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	t0029	2624	1	0	0	1	0	0	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	t0030	2623	1	1	0	0	0	0	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	t0031	2623	1	1	0	0	0	0	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	t0032	2623	1	0	1	0	0	0	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	t0033	2623	1	0	0	0	1	0	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	t0034	2623	1	1	0	0	0	0	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	t0035	2623	1	1	0	0	0	0	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	t0036	2623	1	1	0	0	0	0	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/1	t0037	2623	1	0	0	0	0	0	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	t0038	2623	1	0	0	1	0	0	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	t0039	2623	1	1	0	0	0	0	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	t0040	2623	1	1	0	0	0	0	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	t0041	2624	1	0	0	1	0	0	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	t0042	2623	1	0	1	0	0	0	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	t0043	2623	1	0	0	1	0	0	copy fasta	POMT2	chr14	77269956	77325883
POMT2_chr14_77269956_77325883	0/0	t0044	2623	1	0	0	1	0	0	copy fasta	POMT2	chr14	77269956	77325883
POMZP3_chr7_76604986_76632279	0/0	t0001	965	154	17	28	81	7	21	copy fasta	POMZP3	chr7	76604986	76632279
POMZP3_chr7_76604986_76632279	0/0	t0002	1004	80	5	22	45	2	6	copy fasta	POMZP3	chr7	76604986	76632279
POMZP3_chr7_76604986_76632279	0/1	t0003	970	52	16	15	6	7	7	copy fasta	POMZP3	chr7	76604986	76632279
POMZP3_chr7_76604986_76632279	0/0	t0004	978	49	20	8	18	2	1	copy fasta	POMZP3	chr7	76604986	76632279
POMZP3_chr7_76604986_76632279	0/0	t0005	973	35	0	3	31	0	1	copy fasta	POMZP3	chr7	76604986	76632279
POMZP3_chr7_76604986_76632279	0/0	t0006	973	8	6	2	0	0	0	copy fasta	POMZP3	chr7	76604986	76632279
POMZP3_chr7_76604986_76632279	0/0	t0007	966	6	6	0	0	0	0	copy fasta	POMZP3	chr7	76604986	76632279
POMZP3_chr7_76604986_76632279	0/0	t0008	978	4	3	1	0	0	0	copy fasta	POMZP3	chr7	76604986	76632279
POMZP3_chr7_76604986_76632279	0/0	t0009	973	3	3	0	0	0	0	copy fasta	POMZP3	chr7	76604986	76632279
POMZP3_chr7_76604986_76632279	0/0	t0010	965	3	0	0	3	0	0	copy fasta	POMZP3	chr7	76604986	76632279
POMZP3_chr7_76604986_76632279	0/0	t0011	975	3	3	0	0	0	0	copy fasta	POMZP3	chr7	76604986	76632279
POMZP3_chr7_76604986_76632279	0/0	t0012	973	2	2	0	0	0	0	copy fasta	POMZP3	chr7	76604986	76632279
POMZP3_chr7_76604986_76632279	0/0	t0013	970	2	2	0	0	0	0	copy fasta	POMZP3	chr7	76604986	76632279
POMZP3_chr7_76604986_76632279	0/0	t0014	978	2	0	0	2	0	0	copy fasta	POMZP3	chr7	76604986	76632279
POMZP3_chr7_76604986_76632279	0/0	t0015	978	2	2	0	0	0	0	copy fasta	POMZP3	chr7	76604986	76632279
POMZP3_chr7_76604986_76632279	0/0	t0016	966	2	2	0	0	0	0	copy fasta	POMZP3	chr7	76604986	76632279
POMZP3_chr7_76604986_76632279	0/0	t0017	965	2	2	0	0	0	0	copy fasta	POMZP3	chr7	76604986	76632279
POMZP3_chr7_76604986_76632279	0/0	t0018	955	1	1	0	0	0	0	copy fasta	POMZP3	chr7	76604986	76632279
POMZP3_chr7_76604986_76632279	0/0	t0019	973	1	1	0	0	0	0	copy fasta	POMZP3	chr7	76604986	76632279
POMZP3_chr7_76604986_76632279	0/0	t0020	973	1	1	0	0	0	0	copy fasta	POMZP3	chr7	76604986	76632279
POMZP3_chr7_76604986_76632279	0/0	t0021	965	1	0	0	0	0	1	copy fasta	POMZP3	chr7	76604986	76632279
POMZP3_chr7_76604986_76632279	0/0	t0022	996	1	0	0	0	0	1	copy fasta	POMZP3	chr7	76604986	76632279
POMZP3_chr7_76604986_76632279	0/0	t0023	1004	1	0	0	1	0	0	copy fasta	POMZP3	chr7	76604986	76632279
POMZP3_chr7_76604986_76632279	0/0	t0024	992	1	0	0	1	0	0	copy fasta	POMZP3	chr7	76604986	76632279
POMZP3_chr7_76604986_76632279	0/0	t0025	970	1	0	0	0	0	1	copy fasta	POMZP3	chr7	76604986	76632279
POMZP3_chr7_76604986_76632279	0/0	t0026	970	1	1	0	0	0	0	copy fasta	POMZP3	chr7	76604986	76632279
POMZP3_chr7_76604986_76632279	0/0	t0027	970	1	0	1	0	0	0	copy fasta	POMZP3	chr7	76604986	76632279
POMZP3_chr7_76604986_76632279	0/0	t0028	978	1	1	0	0	0	0	copy fasta	POMZP3	chr7	76604986	76632279
POMZP3_chr7_76604986_76632279	0/0	t0029	970	1	1	0	0	0	0	copy fasta	POMZP3	chr7	76604986	76632279
POMZP3_chr7_76604986_76632279	0/0	t0030	963	1	1	0	0	0	0	copy fasta	POMZP3	chr7	76604986	76632279