JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
POMZP3_chr7_76604986_76632279	0/0	t0031	965	1	0	0	0	0	1	copy fasta	POMZP3	chr7	76604986	76632279
PON1_chr7_95292676_95329532	0/0	t0001	1326	134	16	28	55	10	25	copy fasta	PON1	chr7	95292676	95329532
PON1_chr7_95292676_95329532	0/0	t0002	1326	100	7	9	79	3	2	copy fasta	PON1	chr7	95292676	95329532
PON1_chr7_95292676_95329532	0/0	t0003	1322	69	19	13	33	0	4	copy fasta	PON1	chr7	95292676	95329532
PON1_chr7_95292676_95329532	1/1	t0004	1326	66	18	12	20	3	11	copy fasta	PON1	chr7	95292676	95329532
PON1_chr7_95292676_95329532	0/0	t0005	1326	17	14	3	0	0	0	copy fasta	PON1	chr7	95292676	95329532
PON1_chr7_95292676_95329532	0/0	t0006	1326	8	1	0	6	0	1	copy fasta	PON1	chr7	95292676	95329532
PON1_chr7_95292676_95329532	0/0	t0007	1326	4	3	1	0	0	0	copy fasta	PON1	chr7	95292676	95329532
PON1_chr7_95292676_95329532	0/0	t0008	1322	4	0	1	2	0	1	copy fasta	PON1	chr7	95292676	95329532
PON1_chr7_95292676_95329532	0/0	t0009	1326	3	3	0	0	0	0	copy fasta	PON1	chr7	95292676	95329532
PON1_chr7_95292676_95329532	0/0	t0010	1326	3	0	0	3	0	0	copy fasta	PON1	chr7	95292676	95329532
PON1_chr7_95292676_95329532	0/0	t0011	1330	3	3	0	0	0	0	copy fasta	PON1	chr7	95292676	95329532
PON1_chr7_95292676_95329532	0/0	t0012	1328	3	2	1	0	0	0	copy fasta	PON1	chr7	95292676	95329532
PON1_chr7_95292676_95329532	0/0	t0013	1326	2	0	1	0	0	1	copy fasta	PON1	chr7	95292676	95329532
PON1_chr7_95292676_95329532	0/0	t0014	1330	2	2	0	0	0	0	copy fasta	PON1	chr7	95292676	95329532
PON1_chr7_95292676_95329532	0/0	t0015	1326	2	2	0	0	0	0	copy fasta	PON1	chr7	95292676	95329532
PON1_chr7_95292676_95329532	0/0	t0016	1326	2	0	0	0	0	2	copy fasta	PON1	chr7	95292676	95329532
PON1_chr7_95292676_95329532	0/0	t0017	1326	1	1	0	0	0	0	copy fasta	PON1	chr7	95292676	95329532
PON1_chr7_95292676_95329532	0/0	t0018	1326	1	1	0	0	0	0	copy fasta	PON1	chr7	95292676	95329532
PON1_chr7_95292676_95329532	0/0	t0019	1326	1	0	0	1	0	0	copy fasta	PON1	chr7	95292676	95329532
PON1_chr7_95292676_95329532	0/0	t0020	1326	1	0	0	0	0	1	copy fasta	PON1	chr7	95292676	95329532
PON1_chr7_95292676_95329532	0/0	t0021	1322	1	0	0	1	0	0	copy fasta	PON1	chr7	95292676	95329532
PON1_chr7_95292676_95329532	0/0	t0022	1326	1	0	0	1	0	0	copy fasta	PON1	chr7	95292676	95329532
PON1_chr7_95292676_95329532	0/0	t0023	1326	1	1	0	0	0	0	copy fasta	PON1	chr7	95292676	95329532
PON1_chr7_95292676_95329532	0/0	t0024	1326	1	1	0	0	0	0	copy fasta	PON1	chr7	95292676	95329532
PON1_chr7_95292676_95329532	0/0	t0025	1326	1	0	1	0	0	0	copy fasta	PON1	chr7	95292676	95329532
PON1_chr7_95292676_95329532	0/0	t0026	1326	1	0	0	1	0	0	copy fasta	PON1	chr7	95292676	95329532
PON1_chr7_95292676_95329532	0/0	t0027	1326	1	1	0	0	0	0	copy fasta	PON1	chr7	95292676	95329532
PON1_chr7_95292676_95329532	0/0	t0028	1326	1	1	0	0	0	0	copy fasta	PON1	chr7	95292676	95329532
PON2_chr7_95399862_95440028	1/1	t0001	546	292	62	52	140	12	24	copy fasta	PON2	chr7	95399862	95440028
PON2_chr7_95399862_95440028	0/0	t0002	549	96	24	18	39	0	15	copy fasta	PON2	chr7	95399862	95440028
PON2_chr7_95399862_95440028	0/0	t0003	546	4	3	1	0	0	0	copy fasta	PON2	chr7	95399862	95440028
PON2_chr7_95399862_95440028	0/0	t0004	546	3	0	0	3	0	0	copy fasta	PON2	chr7	95399862	95440028
PON2_chr7_95399862_95440028	0/0	t0005	546	2	0	1	0	0	1	copy fasta	PON2	chr7	95399862	95440028
PON2_chr7_95399862_95440028	0/0	t0006	549	1	1	0	0	0	0	copy fasta	PON2	chr7	95399862	95440028
PON3_chr7_95354872_95401375	1/0	t0001	127	328	80	56	147	8	36	copy fasta	PON3	chr7	95354872	95401375
PON3_chr7_95354872_95401375	0/1	t0002	128	20	4	5	8	0	2	copy fasta	PON3	chr7	95354872	95401375
PON3_chr7_95354872_95401375	0/0	t0003	129	15	6	0	7	0	2	copy fasta	PON3	chr7	95354872	95401375
PON3_chr7_95354872_95401375	0/0	t0004	126	9	0	1	2	0	6	copy fasta	PON3	chr7	95354872	95401375
POP1_chr8_98112293_98164835	1/0	t0001	1665	236	28	44	131	5	27	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/0	t0002	1665	71	1	18	35	6	11	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/1	t0003	1666	32	16	5	0	3	7	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/0	t0004	1665	21	20	0	1	0	0	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/0	t0005	1665	13	12	1	0	0	0	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/0	t0006	1669	12	5	0	7	0	0	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/0	t0007	1665	7	1	2	0	0	4	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/0	t0008	1665	7	7	0	0	0	0	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/0	t0009	1665	6	0	0	5	0	1	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/0	t0010	1665	3	0	3	0	0	0	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/0	t0011	1666	3	2	1	0	0	0	copy fasta	POP1	chr8	98112293	98164835