JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
POP1_chr8_98112293_98164835	0/0	t0012	1666	2	1	1	0	0	0	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/0	t0013	1665	2	0	0	2	0	0	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/0	t0014	1665	2	0	2	0	0	0	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/0	t0015	1665	2	0	0	2	0	0	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/0	t0016	1665	1	0	0	1	0	0	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/0	t0017	1665	1	1	0	0	0	0	copy fasta	POP1	chr8	98112293	98164835
POP1_chr8_98112293_98164835	0/0	t0018	1665	1	0	1	0	0	0	copy fasta	POP1	chr8	98112293	98164835
POP4_chr19_29601283_29622237	1/0	t0001	1894	119	8	22	68	4	16	copy fasta	POP4	chr19	29601283	29622237
POP4_chr19_29601283_29622237	0/0	t0002	1894	73	27	0	39	0	7	copy fasta	POP4	chr19	29601283	29622237
POP4_chr19_29601283_29622237	0/1	t0003	1895	60	13	22	17	5	2	copy fasta	POP4	chr19	29601283	29622237
POP4_chr19_29601283_29622237	0/0	t0004	1895	49	5	14	23	2	5	copy fasta	POP4	chr19	29601283	29622237
POP4_chr19_29601283_29622237	0/0	t0005	1895	31	13	6	2	2	8	copy fasta	POP4	chr19	29601283	29622237
POP4_chr19_29601283_29622237	0/0	t0006	1894	30	0	1	28	0	1	copy fasta	POP4	chr19	29601283	29622237
POP4_chr19_29601283_29622237	0/0	t0007	1894	28	4	1	23	0	0	copy fasta	POP4	chr19	29601283	29622237
POP4_chr19_29601283_29622237	0/0	t0008	1895	12	3	1	0	3	5	copy fasta	POP4	chr19	29601283	29622237
POP4_chr19_29601283_29622237	0/0	t0009	1894	8	4	2	2	0	0	copy fasta	POP4	chr19	29601283	29622237
POP4_chr19_29601283_29622237	0/0	t0010	1895	7	1	3	1	0	2	copy fasta	POP4	chr19	29601283	29622237
POP4_chr19_29601283_29622237	0/0	t0011	1894	5	3	0	0	0	2	copy fasta	POP4	chr19	29601283	29622237
POP4_chr19_29601283_29622237	0/0	t0012	1894	4	4	0	0	0	0	copy fasta	POP4	chr19	29601283	29622237
POP4_chr19_29601283_29622237	0/0	t0013	1894	4	0	4	0	0	0	copy fasta	POP4	chr19	29601283	29622237
POP4_chr19_29601283_29622237	0/0	t0014	1894	4	0	1	3	0	0	copy fasta	POP4	chr19	29601283	29622237
POP4_chr19_29601283_29622237	0/0	t0015	1895	4	3	1	0	0	0	copy fasta	POP4	chr19	29601283	29622237
POP4_chr19_29601283_29622237	0/0	t0016	1895	3	0	3	0	0	0	copy fasta	POP4	chr19	29601283	29622237
POP4_chr19_29601283_29622237	0/0	t0017	1894	2	0	0	2	0	0	copy fasta	POP4	chr19	29601283	29622237
POP4_chr19_29601283_29622237	0/0	t0018	1894	2	0	0	2	0	0	copy fasta	POP4	chr19	29601283	29622237
POP4_chr19_29601283_29622237	0/0	t0019	1895	2	2	0	0	0	0	copy fasta	POP4	chr19	29601283	29622237
POP4_chr19_29601283_29622237	0/0	t0020	1895	1	1	0	0	0	0	copy fasta	POP4	chr19	29601283	29622237
POP4_chr19_29601283_29622237	0/0	t0021	1895	1	1	0	0	0	0	copy fasta	POP4	chr19	29601283	29622237
POP4_chr19_29601283_29622237	0/0	t0022	1894	1	1	0	0	0	0	copy fasta	POP4	chr19	29601283	29622237
POP4_chr19_29601283_29622237	0/0	t0023	1895	1	0	0	1	0	0	copy fasta	POP4	chr19	29601283	29622237
POP4_chr19_29601283_29622237	0/0	t0024	1894	1	1	0	0	0	0	copy fasta	POP4	chr19	29601283	29622237
POP4_chr19_29601283_29622237	0/0	t0025	1894	1	1	0	0	0	0	copy fasta	POP4	chr19	29601283	29622237
POP4_chr19_29601283_29622237	0/0	t0026	1895	1	1	0	0	0	0	copy fasta	POP4	chr19	29601283	29622237
POP4_chr19_29601283_29622237	0/0	t0027	1894	1	0	0	1	0	0	copy fasta	POP4	chr19	29601283	29622237
POP4_chr19_29601283_29622237	0/0	t0028	1894	1	1	0	0	0	0	copy fasta	POP4	chr19	29601283	29622237
POP4_chr19_29601283_29622237	0/0	t0029	1895	1	1	0	0	0	0	copy fasta	POP4	chr19	29601283	29622237
POP4_chr19_29601283_29622237	0/0	t0030	1895	1	1	0	0	0	0	copy fasta	POP4	chr19	29601283	29622237
POP4_chr19_29601283_29622237	0/0	t0031	1894	1	0	0	1	0	0	copy fasta	POP4	chr19	29601283	29622237
POP4_chr19_29601283_29622237	0/0	t0032	1894	1	0	0	1	0	0	copy fasta	POP4	chr19	29601283	29622237
POP4_chr19_29601283_29622237	0/0	t0033	1894	1	0	1	0	0	0	copy fasta	POP4	chr19	29601283	29622237
POP4_chr19_29601283_29622237	0/0	t0034	1895	1	1	0	0	0	0	copy fasta	POP4	chr19	29601283	29622237
POP5_chr12_120573764_120586402	1/1	t0001	595	359	73	70	165	16	33	copy fasta	POP5	chr12	120573764	120586402
POP5_chr12_120573764_120586402	0/0	t0002	595	8	7	1	0	0	0	copy fasta	POP5	chr12	120573764	120586402
POP5_chr12_120573764_120586402	0/0	t0003	595	8	8	0	0	0	0	copy fasta	POP5	chr12	120573764	120586402
POP5_chr12_120573764_120586402	0/0	t0004	591	5	0	0	0	0	5	copy fasta	POP5	chr12	120573764	120586402
POP5_chr12_120573764_120586402	0/0	t0005	595	3	3	0	0	0	0	copy fasta	POP5	chr12	120573764	120586402
POP5_chr12_120573764_120586402	0/0	t0006	595	3	0	0	3	0	0	copy fasta	POP5	chr12	120573764	120586402
POP5_chr12_120573764_120586402	0/0	t0007	595	1	0	1	0	0	0	copy fasta	POP5	chr12	120573764	120586402
POP5_chr12_120573764_120586402	0/0	t0008	595	1	0	0	1	0	0	copy fasta	POP5	chr12	120573764	120586402
POP5_chr12_120573764_120586402	0/0	t0009	595	1	1	0	0	0	0	copy fasta	POP5	chr12	120573764	120586402